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gtaagttcagttcatacttatcaatttcttctggaattatttatttgtttagccacattcttccatcaattttctgtttctcttccaagtccctgaatatttactttatgttctgcatgttttgccagCTTTTGGATCCCATGTTGGAAACACAATCGCATAGTGAACTTCTTTCAGCTGTTAGATTGTTGGTATCAGAGGACCATTGTGATGGGAGATTTGTCTTTG
species | Glycine max |
transcript | GLYMA05G34180.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AGACTTACTTGAGCTTAAAGATGGGACTGGAAGAACTGATACAGAAAAAA CTTTTGGATCCCATGTTGGAAACACAATCGCATAGTGAACTTCTTTCAGCTEST: gi|14999619|gb|BI320464.1|BI320464
genomic: AGACTTACTTGAGCTTAAAGATGGGACTGGAAGAACTGATACAGAAAAAAgtaagttcag ... gttttgccagCTTTTGGATCCCATGTTGGAAACACAATCGCATAGTGAACTTCTTTCAGCT
EST: AGACTTACTTGAGCTTAAAGATGGGACTGGAAGAACTGATACAGAAAAAA CTTTTGGATCCCATGTTGGAAACACAATCGCATAGTGAACTTCTTTCAGCT
genomic: AGACTTACTTGAGCTTAAAGATGGGACTGGAAGAACTGATACAGAAAAAAgtaagttcag ... gttttgccagCTTTTGGATCCCATGTTGGAAACACAATCGCATAGTGAACTTCTTTCAGCT
ctgtttctcttccaagtccctgaatatttactttatgttctgcatgttttgccagCTTTTGGATCCCATGTTGGAAACACAATCGCATAGTGAACTTCTTTCAGCTGTTAGATTGTTGGTATCAGAGGACCATTGTGATGGGAGATTTGTCTTTG
ttttgcc CT-rich tract
aatatttactttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcagttcatacttatcaatttcttctggaattatttatttgtttagccacattcttccatcaattttctgtttctcttccaagtccctgaatatttactttatgttctgcatgttttgccagCTTTTGGATCCCATGTTGGAAACACAATCGCATAGTGAACTTCTTTCAGCTGTTAGATTGTTGGTATCAGAGGACCATTGTGATGGGAGATTTGTCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT