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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgatgtgcattaattctcattaacatgtttttttgtgcaaggaattgagaatttattcgttgcttgaatgatttcagttcacagatgtttattttaatattactgtttcattcagGGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAG

Basic information

species Glycine max
transcript GLYMA05G27900.1
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193534351|gb|FK491606.1|FK491606
EST:     ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCT                         GGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
genomic: ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCTgtaagtgatg ... tttcattcagGGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
EST: gi|208165043|gb|GD964991.1|GD964991
EST:     ACATTGGTTATGTTAGTTTATACCCGTTCATGGGAAGGATCATTCCATCT                         GGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
genomic: ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCTgtaagtgatg ... tttcattcagGGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
EST: gi|193399812|gb|FK363589.1|FK363589
EST:     ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCT                         GGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
genomic: ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCTgtaagtgatg ... tttcattcagGGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
EST: gi|193714866|gb|FK652805.1|FK652805
EST:     ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCT                         GGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
genomic: ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCTgtaagtgatg ... tttcattcagGGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
EST: gi|51334717|gb|CO978583.1|CO978583
EST:     ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCT                         GGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
genomic: ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCTgtaagtgatg ... tttcattcagGGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
EST: gi|254323179|gb|GR835787.1|GR835787
EST:     ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCT                         GGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
genomic: ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCTgtaagtgatg ... tttcattcagGGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
EST: gi|13788695|gb|BG651286.1|BG651286
EST:     ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCT                         GGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
genomic: ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCTgtaagtgatg ... tttcattcagGGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
EST: gi|5126438|gb|AI748174.1|AI748174
EST:     ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCT                         GGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
genomic: ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCTgtaagtgatg ... tttcattcagGGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
EST: gi|193389910|gb|FK353675.1|FK353675
EST:     ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCT                         GGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGC
genomic: ACATTGGTTATGTTAGTTTATTCCCGTTCATGGGAAGGATCATTCCATCTgtaagtgatg ... tttcattcagGGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttgaatgatttcagttcacagatgtttattttaatattactgtttcattcagGGATCACGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAG
                               ttttaat  putative branch site (score: 3)
                                             tttcattc  putative PPT
                        atgtttattttaatat  TA-rich tract