Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctagtttctttttgataatattagtatgcttttgttgctgtacttccattatttatatatataacttgcattgacctaatttttaaatttcttcttccagGTTGTTCCACTGCTAATGAAAGCTATAGGGTGGCAAGGTGGAAGCATTTTAGCTCTTGAGACTCTAAAACGTGTTGTGGTTGCAGGAAACCGAGCCAGGG

Basic information

species Glycine max
transcript GLYMA05G08040.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G08040.1 (Glycine max), 3'ss of exon 18
lower sequence: LOC_Os10g42439.1 (Oryza sativa), 3'ss of exon 18
ctagtttctttttgataatatt-agtatgcttttgttgctgtacttccattatttatatatata-acttgcattgacctaatttttaaatttcttcttccagGTTGTTCCACTGCTAATGAAAGCTATAGGGTGGCAAGGTGGAAGCATTTTAGCTCTTGAGACTCTAAAACGTGTTGTGGTTGCAGGAAACCGAGCCAGGG
  |       |    |  |||  | |   |   |    |  || ||| || | |   ||||| | || | | |  |  |  | ||       ||  || |||||||||||| |||| |||||||| || || |||||||||||||| ||  | || || ||||| ||||| |||||||| | ||| || || || || || |
-aaccaaaaatgaagtcctatccaattgacgcatagcacattatttc-atgaatggcatataaagacctacctaaatattttcttgcttcaactgtttgcagGTTGTTCCATTGCTTATGAAAGCAATTGGATGGCAAGGTGGAAGTATACTGGCACTAGAGACACTAAAGCGTGTTGTTGGTGCTGGCAATCGGGCTAGAG

upper sequence: GLYMA05G08040.1 (Glycine max), 3'ss of exon 18
lower sequence: GRMZM2G001895_T01 (Zea mays), 3'ss of exon 12
ctagtttctttttgataatatt-agtatgct---tttgttgc-tgtacttccattatttatatatata-acttgcattgacc---taatttttaaatttcttcttccagGTTGTTCCACTGCTAATGAAAGCTATAGGGTGGCAAGGTGGAAGCATTTTAGCTCTTGAGACTCTAAAACGTGTTGTGGTTGCAGGAAACCGAGCCAGGG
       |  ||| | || ||  |||||| |   ||  | || | | ||  ||  | |   || ||   ||      | |||   || |  || || |   || | |||||||| |||||||| |||||||| || || |||||||||||||| ||  | ||  | |||||  |||| ||||| || | ||| || || || ||  | |
-------cactttaaaaaaatccagtatgatcaattcatagcatattctgtcacaagtggaatctaaggacccatcataaccatttattgcttgaactg--tcatacagGTTGTACCACTGCTTATGAAAGCAATTGGATGGCAAGGTGGAAGTATACTGGCATTGGAGACATTAAAGCGTGTAGTTGGTGCTGGTAATCGGGCTCGTG

upper sequence: GLYMA05G08040.1 (Glycine max), 3'ss of exon 18
lower sequence: Vv11s0016g04420.t01 (Vitis vinifera), 3'ss of exon 18
-ctagtttctttttgataatattagtatgcttttgttgctgtacttccattatttatatatataacttgcattgaccta-atttttaaatttcttcttccagGTTGTTCCACTGCTAATGAAAGCTATAGGGTGGCAAGGTGGAAGCATTTTAGCTCTTGAGACTCTAAAACGTGTTGTGGTTGCAGGAAACCGAGCCAGGG
  ||||| | ||| |  ||  | || |    | |  |||| |   |  ||  | ||||||       |  |  ||   |   || |   | | | |||||||||||| |||||  ||||||||||||| || |||||||||||||||||  |||||||||| || || ||||||||||||||||| ||||| ||||| ||||
catagttgcattt-ggcaacttcag-acatgtgtagtgctctgtgtttatcttatatataatcggtatctagagattcatgcttgttggtctttgcttccagGTTGTACCACTCTTAATGAAAGCTATCGGATGGCAAGGTGGAAGCATACTAGCTCTTGAAACACTGAAACGTGTTGTGGTTGCTGGAAATCGAGCTAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattatttatatatataacttgcattgacctaatttttaaatttcttcttccagGTTGTTCCACTGCTAATGAAAGCTATAGGGTGGCAAGGTGGAAGCATTTTAGCTCTTGAGACTCTAAAACGTGTTGTGGTTGCAGGAAACCGAGCCAGGG
                            acctaat  putative branch site (score: 3)
                                          tttcttcttcc  putative PPT
     atttatatatataact  TA-rich tract