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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaccttttatcttctgaaaattatattagatttccttattcttttaacttggatttaagacttgaactgtgtccccctcctttctttctcttcttttgctaatgtattttttcttgtctcttccctcaagcagGTAGTACATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCACTTGCAG

Basic information

species Glycine max
transcript GLYMA04G41500.1
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406528|gb|EV276343.1|EV276343
EST:     GTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGA                         GTAGTACATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCAC
genomic: GTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGAgtaaaccttt ... cctcaagcagGTAGTACATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCAC
EST: gi|51345213|gb|CO985946.1|CO985946
EST:     GTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGA                         GTAGTACATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCAC
genomic: GTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGAgtaaaccttt ... cctcaagcagGTAGTACATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCAC
EST: gi|9204124|gb|BE330348.1|BE330348
EST:     GTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGA                         GTAGTACATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCAC
genomic: GTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGAgtaaaccttt ... cctcaagcagGTAGTACATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCAC
EST: gi|51336033|gb|CO979899.1|CO979899
EST:     GTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGA                         GTAGTACATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCAC
genomic: GTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGAgtaaaccttt ... cctcaagcagGTAGTACATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttctttctcttcttttgctaatgtattttttcttgtctcttccctcaagcagGTAGTACATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCACTTGCAG
                  tgctaat  putative branch site (score: 2)
                        tgtattttttcttgtc  CT-rich tract
                     taatgtattttttctt  TA-rich tract