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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgcttcgtatttcttgagtgtgaaaaaaaaaatattttatttatggtgtctcaccaaggattgcagaatttataatgaattatgatcaatatttgcagGTTTTCTTGTGATTATGTAAAAATACTTATCAACACCAATTCTTCTTGGGTTGCCTGCATTGATCGGTGGTATTATAGAAATTTGTAAATTCTGAGCCGT

Basic information

species Glycine max
transcript GLYMA03G40440.3
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11687792|gb|BF595468.1|BF595468
EST:     ATTACAGACTAGTTCAAGGCAGTTGACTACAAATTGCATATGCATCAGAG                         GTTTTCTTGTGATTATGTAAAAATACTTATCAACACCAATTCTTCTTGGGT
genomic: ATTACAGACTAGTTCAAGGCAGTTGACTACAAATTGCATATGCATCAGAGgtgggcggta ... atatttgcagGTTTTCTTGTGATTATGTAAAAATACTTATCAACACCAATTCTTCTTGGGT
EST: gi|192313103|gb|FK003699.1|FK003699
EST:     ATTACAGACTAGTTCAAGGCAGTTGACTACAAATTGCATATGCATCAGAG                         GTTTTCTTGTGATTATGTAAAAATACTTATCAACACCAATTCTTCTTGGGT
genomic: ATTACAGACTAGTTCAAGGCAGTTGACTACAAATTGCATATGCATCAGAGgtgggcggta ... atatttgcagGTTTTCTTGTGATTATGTAAAAATACTTATCAACACCAATTCTTCTTGGGT
EST: gi|192313088|gb|FK003698.1|FK003698
EST:     ATTACAGACTAGTTCAAGGCAGTTGACTACAAATTGCATATGCATCAGAG                         GTTTTCTTGTGATTATGTAAAAATACTTATCAACACCAATTCTTCTTGGGT
genomic: ATTACAGACTAGTTCAAGGCAGTTGACTACAAATTGCATATGCATCAGAGgtgggcggta ... atatttgcagGTTTTCTTGTGATTATGTAAAAATACTTATCAACACCAATTCTTCTTGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtgtctcaccaaggattgcagaatttataatgaattatgatcaatatttgcagGTTTTCTTGTGATTATGTAAAAATACTTATCAACACCAATTCTTCTTGGGTTGCCTGCATTGATCGGTGGTATTATAGAAATTTGTAAATTCTGAGCCGT
    gtctcac  putative branch site (score: 3)
                     agaatttataatgaat  TA-rich tract