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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaacaattatagtccatcctaatatgtcagtacaattgcagcttcacaaaattcatttctgttcttttggtcttatctgcagAAAGGTTTCCAGCATATATGTGTAGAACAACCTGGTGTACATGAATTTAGTTTTGTTGACTCATGTATCTTCTTTGGGAGTTCATCAGTGAAAATTAATA

Basic information

species Glycine max
transcript GLYMA03G37930.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37930.2 (Glycine max), 3'ss of exon 18
lower sequence: Vv07s0005g01650.t01 (Vitis vinifera), 3'ss of exon 17
-----------------------------------------gtacaacaattatagtccatc-ctaatatgtcagtac---aattgcagcttcacaaaattcatttctg----ttcttttggtctt--atctgcagAAAGGTTTCCAGCATATATGTGTAGAACAACCTGGTGTACATGAATTTAGTTTTGTTGACTCATGTATCTTCTTTGGGAGTTCATCAGTGAAAATTAATA
                                          || ||| |||||||  ||    | | |  ||  | |   |||   |  |||| |   | |||||        |||||   ||||  | ||||||||||| || |||||||| |||||||||   ||||| ||||||||| |    ||||||||||||||||| ||||||||||| || ||  |||| ||| |||
gttatctccatccattaataatctcattatttgaaattttcatataactattataggacactgttcacacctctatgctaaaatgtgaaattcatagtctgcattttcagtttctctttccttctttgaactgcagAAAGGCTTGCAGCATATTTGTGTAGAATCTCCTGGAGTACATGAACTCCACTTTGTTGACTCATGTATTTTCTTTGGGAGCTCGTCGATGAAGATTGATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21639212|gb|BM253042.1|BM253042
EST:     ATGGTTACCTGACTCAACCTGATGGGTCAAATGTGAATTTGAAAATTCGG                         AAAGGTTTCCAGCATATATGTGTAGAACAACCTGGTGTACATGAATTTAGT
genomic: ATGGTTACCTGACTCAACCTGATGGGTCAAATGTGAATTTGAAAATTCGGgtacaacaat ... ttatctgcagAAAGGTTTCCAGCATATATGTGTAGAACAACCTGGTGTACATGAATTTAGT
EST: gi|120491323|gb|EH219490.1|EH219490
EST:     ATGGTTACCTGACTCAACCTGATGGGTCAAATGTGAATTTGAAAATTCGG                         AAAGGTTTCCAGCATATATGTGTAGAACAACCTGGTGTACATGAATTTAGT
genomic: ATGGTTACCTGACTCAACCTGATGGGTCAAATGTGAATTTGAAAATTCGGgtacaacaat ... ttatctgcagAAAGGTTTCCAGCATATATGTGTAGAACAACCTGGTGTACATGAATTTAGT
EST: gi|16348153|gb|BI973748.1|BI973748
EST:     ATGGTTACCTGACTCAACCTGATGGGTCAAATGTGAATTTGAAAATTCGG                         AAAGGTTTCCAGCATATATGTGTAGAACAACCTGGTGTACATGAATTTAGT
genomic: ATGGTTACCTGACTCAACCTGATGGGTCAAATGTGAATTTGAAAATTCGGgtacaacaat ... ttatctgcagAAAGGTTTCCAGCATATATGTGTAGAACAACCTGGTGTACATGAATTTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtacaattgcagcttcacaaaattcatttctgttcttttggtcttatctgcagAAAGGTTTCCAGCATATATGTGTAGAACAACCTGGTGTACATGAATTTAGTTTTGTTGACTCATGTATCTTCTTTGGGAGTTCATCAGTGAAAATTAATA
                                           tcttatct  CT-rich tract
                    aaaattcattt  TA-rich tract