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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctggacttctcaaaggctcttcagttcatcgtgttgataggcattgtactaacactgacttaaataacttgatccagATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCAATAAACAAAGGATTAGAAAAGGTGGTACAGGAACTATCAACCTCTGAAAATGACGGGCCTATAT

Basic information

species Glycine max
transcript GLYMA02G36440.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G36440.1 (Glycine max), 3'ss of exon 18
lower sequence: AT5G58160.1 (Arabidopsis thaliana), 3'ss of exon 11
--------gttctggacttctcaaaggctcttc----agttcatcgtgttgataggcattgtactaacactgacttaaataacttgatccagATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCAATAAACAAAGGATTAGAAAAGGTGGTACAGGAACTATCAACCTCTGAAAATGACGGGCCTATAT
         ||    | ||  ||  |  |  ||    | || ||        | || | ||   |||   |    |    |  ||||| ||||| ||| |||||||| |||| |||||||||||||| |||||||| ||| | || || || ||||||||||| ||    || |||||||| || || || |
gtactccactttcacattttacatggatttctcctgaaattgataagaaaacttggaactgcgttaattgtcttgtctgaactttgatacagATTCAACTGAAGTTTCTGGCCGAGGAGATGCAAGCTATAAACAAGGGACTTGAGAAAGTCGTACAGGAACTTTCCTTGTCCGAAAATGATGGCCCGATTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023146|gb|CX709887.1|CX709887
EST:     AAGTTTTAGACTTCTCCAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAG                         ATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCAATAAACAAAGGATTA
genomic: AAGTTTTAGACTTCTCCAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAGgttctggact ... cttgatccagATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCAATAAACAAAGGATTA
EST: gi|208187364|gb|GD982202.1|GD982202
EST:     GAGTTTTAGACTTCTCCAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAG                         ATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCAATAAACAAAGGATTA
genomic: AAGTTTTAGACTTCTCCAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAGgttctggact ... cttgatccagATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCAATAAACAAAGGATTA
EST: gi|57574575|gb|CX547550.1|CX547550
EST:     AAGTTTTAGACTTCTCCAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAG                         ATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCAATAAACAAAGGATTA
genomic: AAGTTTTAGACTTCTCCAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAGgttctggact ... cttgatccagATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCAATAAACAAAGGATTA
EST: gi|207704445|gb|GD684112.1|GD684112
EST:     GAGTTTTAGACTTCTCCAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAG                         ATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCAATAAACAAAGGATTG
genomic: AAGTTTTAGACTTCTCCAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAGgttctggact ... cttgatccagATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCAATAAACAAAGGATTA
EST: gi|208255788|gb|GE052767.1|GE052767
EST:     AAGTTTTAGACTTCTCCAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAG                         ATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCAATAAACAAAGGATTA
genomic: AAGTTTTAGACTTCTCCAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAGgttctggact ... cttgatccagATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCAATAAACAAAGGATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttcatcgtgttgataggcattgtactaacactgacttaaataacttgatccagATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCAATAAACAAAGGATTAGAAAAGGTGGTACAGGAACTATCAACCTCTGAAAATGACGGGCCTATAT
                                     ttaaataacttgat  TA-rich tract