1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...agtgtgctctcaacatttactttatgcatctcaacaattactttaacacttgtttgtgcaatgctaatgaataaagtcttaattcaaatttgcttttcagGTACAAGCGCAAGTAGCATTTGAGGCTAACAATCCCTGTCATAAATATGTGCATGGAAGGACCATAAATCTGCAATGCGTGTCCTTATACCATATCAACT
species | Glycine max |
transcript | GLYMA02G25240.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: GGTGTGGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAG GTACAAGCGCAAGTAGCATTTGAGGCTAACAATCCCTGTCATAAATATGTGEST: gi|7589291|gb|AW705068.1|AW705068
genomic: GGTGTGGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAGgtattaatta ... tgcttttcagGTACAAGCGCAAGTAGCATTTGAGGCTAACAATCCCTGTCATAAATATGTG
EST: GGTGTGGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAG GTACAAGCGCAAGTAGCATTTGAGGCTAACAATCCCTGTCATAAATATGTGEST: gi|193435244|gb|FK399870.1|FK399870
genomic: GGTGTGGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAGgtattaatta ... tgcttttcagGTACAAGCGCAAGTAGCATTTGAGGCTAACAATCCCTGTCATAAATATGTG
EST: GGTGTGGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAG GTACAAGCGCAAGTAGCATTTGAGGCTAACAATCCCTGTCATAAATATGTGEST: gi|58018155|gb|CX704897.1|CX704897
genomic: GGTGTGGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAGgtattaatta ... tgcttttcagGTACAAGCGCAAGTAGCATTTGAGGCTAACAATCCCTGTCATAAATATGTG
EST: GGTGTGGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAG GTACAAGCGCAAGTAGCATTTGAGGCTAACAATCCCTGTCATAAATATGTGEST: gi|193432247|gb|FK392995.1|FK392995
genomic: GGTGTGGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAGgtattaatta ... tgcttttcagGTACAAGCGCAAGTAGCATTTGAGGCTAACAATCCCTGTCATAAATATGTG
EST: GGTGTGGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAG GTACAAGCGCAAGTAGCATTTGAGGCTAACAATCCCTGTCATAAATATGTGEST: gi|193332977|gb|FK300723.1|FK300723
genomic: GGTGTGGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAGgtattaatta ... tgcttttcagGTACAAGCGCAAGTAGCATTTGAGGCTAACAATCCCTGTCATAAATATGTG
EST: GGTGTGGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAG GTACAAGCGCAAGTAGCATTTGAGGCTAACAATCCCTGTCATAAATATGTG
genomic: GGTGTGGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAGgtattaatta ... tgcttttcagGTACAAGCGCAAGTAGCATTTGAGGCTAACAATCCCTGTCATAAATATGTG
acacttgtttgtgcaatgctaatgaataaagtcttaattcaaatttgcttttcagGTACAAGCGCAAGTAGCATTTGAGGCTAACAATCCCTGTCATAAATATGTGCATGGAAGGACCATAAATCTGCAATGCGTGTCCTTATACCATATCAACT
tttgcttttc CT-rich tract
taatgaataaagtctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgtgctctcaacatttactttatgcatctcaacaattactttaacacttgtttgtgcaatgctaatgaataaagtcttaattcaaatttgcttttcagGTACAAGCGCAAGTAGCATTTGAGGCTAACAATCCCTGTCATAAATATGTGCATGGAAGGACCATAAATCTGCAATGCGTGTCCTTATACCATATCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
-gtgtgct
- - - - ctcaaca
- - - - - - - - - - - tatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgct