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...ttgaagacattactattttcctatagtgcctgtgttcctagacattcagggtttacgctgttgctccttgattattgatcatgctgtcttgttgttccagGTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAGAAGCTACTTGAACATTTCAGAGACAAAGCTGCAGCTTTCGAATGATACT
species | Glycine max |
transcript | GLYMA02G03750.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAG GTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAGEST: gi|22931879|gb|BU549018.1|BU549018
genomic: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAGgtttttccct ... gttgttccagGTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAG
EST: AATACAACTACANCTTGGTTGNNNGAGAGGAGGAAGCTAATACAGGACAG GTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAGEST: gi|213595624|gb|DB977948.1|DB977948
genomic: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAGgtttttccct ... gttgttccagGTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAG
EST: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAG GTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAGEST: gi|7285441|gb|AW597928.1|AW597928
genomic: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAGgtttttccct ... gttgttccagGTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAG
EST: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAG GTGAGTGTACGAGTTAGAGACTTGGCAEST: gi|6341579|gb|AW164403.1|AW164403
genomic: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAGgtttttccct ... gttgttccagGTGAGTGTACGAGTTAGAGACTTGGCA
EST: AATACAACTACATCTTTGTTGTTGGAGAGGACGAAGCTAATACAGGACAG GTGAGTGTACGAGTTAGAGACTTTGCAGAACATAAEST: gi|13478764|gb|BG508107.1|BG508107
genomic: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAGgtttttccct ... gttgttccagGTGAGTGTACGAGTTAGAGACTTGGCAGAACATAA
EST: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAG GTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAGEST: gi|12773071|gb|BG237998.1|BG237998
genomic: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAGgtttttccct ... gttgttccagGTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAG
EST: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAG GTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAGEST: gi|7145866|gb|AW507788.1|AW507788
genomic: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAGgtttttccct ... gttgttccagGTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAG
EST: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAG GTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAGEST: gi|254320236|gb|GR829424.1|GR829424
genomic: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAGgtttttccct ... gttgttccagGTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAG
EST: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAG GTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAGEST: gi|7590550|gb|AW706300.1|AW706300
genomic: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAGgtttttccct ... gttgttccagGTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAG
EST: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAG GTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAG
genomic: AATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAGgtttttccct ... gttgttccagGTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAG
tcagggtttacgctgttgctccttgattattgatcatgctgtcttgttgttccagGTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAGAAGCTACTTGAACATTTCAGAGACAAAGCTGCAGCTTTCGAATGATACT
tattgat putative branch site (score: 3)
tcttgtt putative PPT
ttgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaagacattactattttcctatagtgcctgtgttcctagacattcagggtttacgctgttgctccttgattattgatcatgctgtcttgttgttccagGTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAGAAGCTACTTGAACATTTCAGAGACAAAGCTGCAGCTTTCGAATGATACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - cctgtgt
- - - - - - - - - - - - - - - - - - - - -acattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgct