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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatttctagtactctgcatcttgaagtagtagagcatagtatatgaattatttgatgtaactggttgagaatattagctcttaattggcgtactgtcttttgctttatagGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAAATTGAGGAAGCTAATAAAATTGCTGTAAGAGTTATTCAAGAG

Basic information

species Glycine max
transcript GLYMA01G39430.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39430.1 (Glycine max), 3'ss of exon 18
lower sequence: Vv07s0031g00470.t01 (Vitis vinifera), 3'ss of exon 16
gttatttctagtactctgcatcttgaagtagtagagcatagtatatgaattatttgatgta---actggttgagaatat-tagctcttaattggcgtactgtcttttgctttatagGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAAATTGAGGAAGCTAATAAAATTGCTGTAAGAGTTATTCAAGAG
        |  ||   || || ||||   | |  |   | || | | || | |||| ||||   ||||||| |    |  | ||| |||   |    | |||||| |    |  ||||||| ||||| |||||||||||||| |||||||| | |||||| ||||| |||    |||| ||   |||||| |  | ||| |||||||||
------gtttatatcttgtatattgag--aatccaaatttgt-tgttaactttttgctgtattaactggttcaagtaacgtggctgtta---gatccattgtcttgtatcctgcagGTGATATATGGTGATACTGATTCAATTATGATTTATACTGGGCTGGATGATATTACAAAAGCCAAAGCAATTGCAGGGAAAGTCATTCAAGAG

upper sequence: GLYMA01G39430.1 (Glycine max), 3'ss of exon 18
lower sequence: EFJ15342 (Selaginella moellendorffii), 3'ss of exon 19
gttatttctagtactctgcatcttgaagtagtagagcatagtatatgaattatttgatgtaactggttgagaatattagctcttaattggcgtactgtcttttgctttat-agGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAAATTGAGGAAGCTAATAAAATTGCTGTAAGAGTTATTCAAGAG
                                                                |    |   | ||| ||  | |      ||| ||  | |   | |  ||||||||||||| ||||||||||||||||||||  | |  ||||| || ||  ||    | || || |  ||||| |    ||||||| | |||
----------------------------------------------------------------gtactaatgttttatctacttaagatattacagttatctctgtgaccagGTGATCTATGGGGATACTGATTCAATAATGATCAATACGGGGCTGGACGATCTTTTAAAGGCCAAAAGCATTGCCGCGCAAGTTATTAAGGAG

upper sequence: GLYMA01G39430.1 (Glycine max), 3'ss of exon 18
lower sequence: EFJ25004 (Selaginella moellendorffii), 3'ss of exon 19
gttatttctagtactctgcatcttgaagtagtagagcatagtatatgaattatttgatgtaactggttgagaatattagctcttaattggcgtactgtcttttgctttat-agGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAAATTGAGGAAGCTAATAAAATTGCTGTAAGAGTTATTCAAGAG
                                                                   | |   | ||| ||  | |      ||| ||  | |   | |  ||||||||||||| ||||||||||||||||||||  | |  ||||| || ||  ||    | || || |  ||||| |    ||||||| | |||
---------------------------------------------------------------gtactaaatgttttatctacttaagatattacagttatctctgtgaccagGTGATCTATGGGGATACTGATTCAATAATGATCAATACGGGGCTGGACGATCTTTTAAAGGCCAAAAGCATTGCCGCGCAAGTTATTAAGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395403|gb|EV265280.1|EV265280
EST:     AGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAG                         GTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAA
genomic: AGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGgttatttcta ... tgctttatagGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAA
EST: gi|193488012|gb|FK453161.1|FK453161
EST:     AGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAG                         GTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAA
genomic: AGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGgttatttcta ... tgctttatagGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAA
EST: gi|208161268|gb|GD963442.1|GD963442
EST:     AGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAG                         GTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAA
genomic: AGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGgttatttcta ... tgctttatagGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaactggttgagaatattagctcttaattggcgtactgtcttttgctttatagGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAAATTGAGGAAGCTAATAAAATTGCTGTAAGAGTTATTCAAGAG
                       tcttaat  putative branch site (score: 3)
                                     ctgtcttttgcttt  putative PPT
            agaatatta  TA-rich tract