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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtgaaatgatagtctgaatccaaattaggttattacatgaaacatacatacctgttactaaatcatagcgttttaaaactgatctgtttcttgttttagTCACATTGGATTGGTAAGGAGTACTACAAGAGTGGGCCACGCGGAAATGACATTCAGAGAACAAACGTTCCTCACATCCGGTTGGAATTCCGTGATACG

Basic information

species Glycine max
transcript GLYMA01G29470.1
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26267857|gb|CA818920.1|CA818920
EST:     AGATTGCCCGTAATTCAGTTTATCAATCAGGTTTCTCACATGCTTTAAAG                         TCACATTGGATTGGTAAGGAGTACTACAAGAGTGGGCCACGCGGAAATGAC
genomic: AGATTGCCCGTAATTCAGTTTATCAATCAGGTTTCTCACATGCTTTAAAGgtacatttct ... cttgttttagTCACATTGGATTGGTAAGGAGTACTACAAGAGTGGGCCACGCGGAAATGAC
EST: gi|254332341|gb|GR846386.1|GR846386
EST:     AGATTGCCCGTAATTCAGTTTATCAATCAGGTTTCTCACATGCTTTAAAG                         TCACATTGGATTGGTAAGGAGTACTACAAGAGTGGGCCACGCGGAAATGAC
genomic: AGATTGCCCGTAATTCAGTTTATCAATCAGGTTTCTCACATGCTTTAAAGgtacatttct ... cttgttttagTCACATTGGATTGGTAAGGAGTACTACAAGAGTGGGCCACGCGGAAATGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatacctgttactaaatcatagcgttttaaaactgatctgtttcttgttttagTCACATTGGATTGGTAAGGAGTACTACAAGAGTGGGCCACGCGGAAATGACATTCAGAGAACAAACGTTCCTCACATCCGGTTGGAATTCCGTGATACG
                                      tctgtttcttgtttt  CT-rich tract
                          ttttaaaact  TA-rich tract