Sequence
atgc intronic sequence ATGC exonic sequencegtagtctgtttcactttctttgctaccttgtcacacaacatataggctctgcaattttcatttttgttcttttgccagGGTATCCAAGTGCAGGAATACTATGGCAACTTCTGTAAACGCATTCCAACTGATGTTGACCTACCCGGG
Basic information
species | Glycine max |
transcript | GLYMA20G24330.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G24330.1 (Glycine max), 3'ss of exon 17
lower sequence: AT3G44340.1 (Arabidopsis thaliana), 3'ss of exon 17
---gtagtctgtttcacttt-ctttg-ctaccttgtcacacaacatatag--gctctgcaattttcatttttgttcttt-tgccagGGTATCCAAGTGCAGGAATACTATGGCAACTTCTGTAAACGCATTCCAACTGATGTTGACCTACCCGGG
| | ||| || || || | | | || | | | | || | || |||||| || | ||||||| |||||||| ||||||| || ||||||||||| ||||| |||||||| | || ||||| | |
gtaatgttttgtggcagagagctctgtccaagtcaaatttcagcttgaggttatttgataaataccacttttgtcgattattgtagGGTATTCAAGTGCAAGAATACTCAGGGAACTTCTGTAAGCGCATACCAACTGACATCGATCTACCTGCG
upper sequence: GLYMA20G24330.1 (Glycine max), 3'ss of exon 17
lower sequence: AT4G32640.2 (Arabidopsis thaliana), 3'ss of exon 16
--------------------gtagtctgtttcactttctttgctaccttgtcacacaacatataggctctgcaattttcatttttgttcttttgccagGGTATCCAAGTGCAGGAATACTATGGCAACTTCTGTAAACGCATTCCAACTGATGTTGACCTACCCGGG
|| ||| | || | || || || | || | |||| || ||| | | ||| ||||||| |||||||| ||||||| ||| || ||||| ||||||||||||||||| |||| ||||| | |
gtatgtttttgcggtagagggttctcttcatgcattattctgttaactc-cagcttaaggctaattttctgtaaaccatcgtttccatttattgt-agGGTATTCAAGTGCAAGAATACTCTGGGAATTTCTGCAAACGCATTCCAACTGACATTGATCTACCAGCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193379817|gb|FK344891.1|FK344891EST: TCACTAGGTCACAAGGTTTTGAGGCTGTAATGCGTGTGAGGTGCAGTCAG GGTATTCAAGTGCAGGAAT
genomic: TCACTAGGCCACAAGGTTTTGAGGCTGTAATGCGTGTGAGGTGCAGTCAGgtagtctgtt ... cttttgccagGGTATCCAAGTGCAGGAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taccttgtcacacaacatataggctctgcaattttcatttttgttcttttgccagGGTATCCAAGTGCAGGAATACTATGGCAACTTCTGTAAACGCATTCCAACTGATGTTGACCTACCCGGG
ttttcatttttgttct CT-rich tract
aattttcatttttgtt TA-rich tract