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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctatttttattactaatccattgcatggtagaacaatcatccttcttcctcaaactaaacttttatttttttcccaagttatttttcatgatttattatcaatatcctcgaaataaaattttattttcttcacctactgtatctctctttgttttgcagCCTGTTTATCTTGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACAT

Basic information

species Glycine max
transcript GLYMA20G24040.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24040.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G376731_T01 (Zea mays), 3'ss of exon 17
gtatgctatttttattactaatccattgcatggtagaacaatcatccttcttcctcaaactaaacttttatttttttcccaagttatttttcatgatttattatcaatatcctcgaaataaaattttattttcttcacctactgtatctctc--tttgttttgcagCCTGTTTATCTTGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACAT
   |||||   |  | || ||||| |           ||  |  |  || |   |||  | ||||| || |  || |  ||    | ||   |    ||  |  ||  |||      ||   | ||    || |  |  ||||   |||      ||| | ||||| |    ||||| || ||  | ||||| || || ||   |||||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||
--gtgctaacatcttcacaaatccttc----------actgttttttttgtatatcatgcaaaactattttggttctttcag---agttcagactccttggtgccatgatctcttgtatgccaattc--cttgtgaagatactaattcttctaagttgctatgcagGCAAAATATCTAGATATATTTATGCCGCCTTTGATCACGAAGTGGCAGCAACTTTCCAATTCTGACAAAGATCTATTTCCACTCCTTGAATGCTTTACAT

upper sequence: GLYMA20G24040.1 (Glycine max), 3'ss of exon 17
lower sequence: AT2G16950.1 (Arabidopsis thaliana), 3'ss of exon 17
gtatgctatttttattactaatccattgcatggtagaacaatcatccttcttcctcaaactaaacttttatttttttcccaagttatttttcatgatttatta--tcaatatcctcgaaataaaatt--ttattttcttcacctactgtatctctctttgttttgcagCCTGTTTATCTTGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACAT
                                ||| ||||||     || | |   |   ||| ||  | || |      |  |  ||    |   ||| | |  || |||| || |   ||  ||   || |||||||  ||||||  |  |  || | |  ||||||||| ||||||||| ||||| ||||| ||| |  |||  |||||||| ||||||||||||||||| |||||||| |||||  | || || ||||||||||
--------------------------------gtataacaattgggtttgtac--aaggttaatctgatcttgtaaatttagctccttgactagtgtttttcaaatccatatactggtggtagtataagtttttttctttgcctacttaagtttcctctctcatgcagCCTGCTTATCTTGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACAT

upper sequence: GLYMA20G24040.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 3'ss of exon 17
gtatgctatttttattactaatccattgcatggtagaacaatcatccttcttcctcaaactaaacttttatttttttcccaagttatttttcatgatttattatcaatatcctcgaaataaaattttattttcttcacctactgtatctctctttgttttgcagCCTGTTTATCTTGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACAT
                                                                                      |  || |     |  | | | |||  |  ||||| |||        ||   |  | |   | |||  || ||||| ||||    |||||||| ||||| ||||| ||||| || |  ||||||||||||||||| |||||||| |||||  |||| || || ||||| ||||||||||
-------------------------------------------------------------------------------------gtactttaattcatgctgtgattatgtt--aaatacaatg-------ctctgctaattcagtatcttgtttttttgtagCCCACCTATCTTGATATTCTAATGCCGCCATTGATCGCAAAGTGGCAGCAACTTTCTAATTCAGATAAAGACATTTTCCCACTGCTGGAGTGCTTTACAT

upper sequence: GLYMA20G24040.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv18s0001g00910.t01 (Vitis vinifera), 3'ss of exon 17
gtatgctatttttattactaatccattgcatggtagaacaatcatccttcttcctcaaactaaacttttatttttttcccaagttatttttcatgatttattatcaatatcctcga-aataaaattttattttcttcacctactgtatctctctttgttttgcagCCTGTTTATCTTGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACAT
||| ||  || |||||  |        |||||         |  |  ||||| |      |   | || || |      ||           |    ||  | |   | | ||  |  || |      |   |  | ||   |  | | |   ||   |   ||| |    || ||||| ||||| ||||| ||||||||||  |||||||||| | |||| |||||||||||||| || ||||| || || || ||||||||||
gtaagcc-ttcttatttttgg------gcatgagttggtgtttgtttttctttcctttggtgctccttgatgtggaaatcagagggggacagaatgcttggtgtttttgttcttcacgatcaggacacaagctactaacgc-ccatcttttgattctatacacagTCCAGATACCTTGATATTCTGATGCCTCCATTAATTGCAAAGTGGCAGCTAGTTTCCAATTCAGACAAAGACCTCTTTCCACTGCTAGAGTGCTTTACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctcgaaataaaattttattttcttcacctactgtatctctctttgttttgcagCCTGTTTATCTTGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACAT
                   ttttcttcacctactg  CT-rich tract
      aaataaaattttattt  TA-rich tract