1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtatgtatatataattcattatcatatgcttccagtttctagttttatgatatattttgcctgtattaccaaacatttgacatcaaagaaatattcagCTTAGAGGATTTGAGCTGCTAAAAGCCATTCATCTGGAACCAAATCCCTTCGACATAGAAAGAGATTTAATAACTCCAACATTCAAATTGAAGAGACCAC
species | Glycine max |
transcript | GLYMA20G01060.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CAAGAAAACACATTTTGGATGAGCTCAACAGCACTGGTCAGAAACACCAA CTTAGAGGATTTGAGCTGCTAAAAGCCATTCATCTGGAACCAAATCCCTTCEST: gi|308097938|gb|HO761109.1|HO761109
genomic: CAAGAAAACACATTTTGGATGAGCTCAACAGCACTGGTCAGAAACACCAAgtatgtatat ... aaatattcagCTTAGAGGATTTGAGCTGCTAAAAGCCATTCATCTGGAACCAAATCCCTTC
EST: CAAGAAAACACATTTTGGATGAGCTCAACAGCACTGGTCAGAAACACCAA CTTAGAGGATTTGAGCTGCTAAAAGCCATTCATCTGGAACCAAATCCCTTCEST: gi|308098415|gb|HO760156.1|HO760156
genomic: CAAGAAAACACATTTTGGATGAGCTCAACAGCACTGGTCAGAAACACCAAgtatgtatat ... aaatattcagCTTAGAGGATTTGAGCTGCTAAAAGCCATTCATCTGGAACCAAATCCCTTC
EST: CAAGAAAACACATTTTGGATGAGCTCAACAGCACTGGTCAGAAACACCAA CTTAGAGGATTTGAGCTGCTAAAAGCCATTCATCTGGAACCAAATCCCTTCEST: gi|7234704|gb|AW570039.1|AW570039
genomic: CAAGAAAACACATTTTGGATGAGCTCAACAGCACTGGTCAGAAACACCAAgtatgtatat ... aaatattcagCTTAGAGGATTTGAGCTGCTAAAAGCCATTCATCTGGAACCAAATCCCTTC
EST: CAAGAAAACACATTTTGGATGAGCTCAACAGCACTGGTCAGAAACACCAA CTTAGAGGATTTGAGCTGCTAAAAGCCATTCATCTGGAACCAAATCCCTTCEST: gi|308098093|gb|HO761264.1|HO761264
genomic: CAAGAAAACACATTTTGGATGAGCTCAACAGCACTGGTCAGAAACACCAAgtatgtatat ... aaatattcagCTTAGAGGATTTGAGCTGCTAAAAGCCATTCATCTGGAACCAAATCCCTTC
EST: TAAGAAAACACATTTTGGATGAGCTCAACAGCACTGGTCAGAAACACCAA CTTAGAGGATTTGAGCTGCTAAAAGCCATTCATCTGGAACCAAATCCCTTC
genomic: CAAGAAAACACATTTTGGATGAGCTCAACAGCACTGGTCAGAAACACCAAgtatgtatat ... aaatattcagCTTAGAGGATTTGAGCTGCTAAAAGCCATTCATCTGGAACCAAATCCCTTC
tttatgatatattttgcctgtattaccaaacatttgacatcaaagaaatattcagCTTAGAGGATTTGAGCTGCTAAAAGCCATTCATCTGGAACCAAATCCCTTCGACATAGAAAGAGATTTAATAACTCCAACATTCAAATTGAAGAGACCAC
atttgac putative branch site (score: 4)
atcaaagaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatatataattcattatcatatgcttccagtttctagttttatgatatattttgcctgtattaccaaacatttgacatcaaagaaatattcagCTTAGAGGATTTGAGCTGCTAAAAGCCATTCATCTGGAACCAAATCCCTTCGACATAGAAAGAGATTTAATAACTCCAACATTCAAATTGAAGAGACCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA