Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcttcttttgtttccaccctttctatttttgtctgcctttgtttttccaagttcgccatcaactattttctgttttcttctgttgccgtggcatatatatttttaattcttatttcttgtacactgcagGAGCTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTTGCACTATTTCTTAGCATGCCAAG

Basic information

species Glycine max
transcript GLYMA19G40520.2
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193704879|gb|FK646595.1|FK646595
EST:     AGATCCATGTTGGCCCACTGAGATACTGGATTGAAGATCAGCTGAAGCAG                         GAGCTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
genomic: AGATCCATGTTGGCCCACTGAGATACTGGATTGAAGATCAGCTGAAGCAGgtttcttctt ... tacactgcagGAGCTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
EST: gi|208149638|gb|GD948202.1|GD948202
EST:     AGATCCATGTTGGCCCACTGAGATACTAGATTGAAGATCAGCTGAAGCAG                         GAGCTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTT
genomic: AGATCCATGTTGGCCCACTGAGATACTGGATTGAAGATCAGCTGAAGCAGgtttcttctt ... tacactgcagGAGCTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTT
EST: gi|51338061|gb|CO981927.1|CO981927
EST:     AGATCCATGTTGGCCCACTGAGATACTGGATTGAAGATCAGCTGAAGCAG                         GAGCTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
genomic: AGATCCATGTTGGCCCACTGAGATACTGGATTGAAGATCAGCTGAAGCAGgtttcttctt ... tacactgcagGAGCTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttctgttgccgtggcatatatatttttaattcttatttcttgtacactgcagGAGCTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTTGCACTATTTCTTAGCATGCCAAG
                          ttttaat  putative branch site (score: 3)
                                ttcttatttcttgt  CT-rich tract
                  atatatatttttaatt  TA-rich tract