Sequence
atgc intronic sequence ATGC exonic sequencegtaagtatttttgaaggatgtagttaaataccaaaacccatggatgctggaactaagctaattaactagtttttctatattgacccatacatttctatgaacctaaatttatgttctgcagGTAAATACACATCTTACCCCACGCCCAATTTTACTTACTCGACATGGGGAAAGTCAGGATAATGTGAGAGGCAGAATTGGAGGGGATACTGCAATAAGG
Basic information
species | Glycine max |
transcript | GLYMA18G06770.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G06770.1 (Glycine max), 3'ss of exon 17
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 3'ss of exon 15
gtaagtatttttgaaggatgtagttaaataccaaaacccatggatgctggaactaagctaattaactagtttttctatattgacccatacatttctatgaacctaaatttatgttctgcagGTAAATACACATCTTACCCCACGCCCAATTTTACTTACTCGACATGGGGAAAGTCAGGATAATGTGAGAGGCAGAATTGGAGGGGATACTGCAATAAGG
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---------------gtctatcgccaacagactcaacattcatcgtctaattatataaaaataacctagagtgctcat---gacatcatcgttttttaaagcgctgattt---tcttctagGTGAATACGCATCTCACCCCACGACCAATACTACTCACTCGGCATGGAGAAAGCATGGATAATGTTAGAGGCAGAATTGGAGGAGATAGCGTAATAAG-
upper sequence: GLYMA18G06770.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 3'ss of exon 15
gtaagtatttttgaaggatgtagttaaataccaaaacccatggatgctggaactaagctaattaactagtttttctatattgacccatacatttctatgaacctaaatttatgttctgcagGTAAATACACATCTTACCCCACGCCCAATTTTACTTACTCGACATGGGGAAAGTCAGGATAATGTGAGAGGCAGAATTGGAGGGGATACTGCAATAAGG
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------------acagggtgtcattata-actaattttccttttctctgcttttcattt--ttaaatactattgctct-ttaacatagaa-----catgaactcttaataatgttttgcagGTTAATACACATCTCACACCCCGACCAATTTTACTTACTAGGCATGGAGAGAGTCGGGATAATGTTAGAGGTAGAATTGGGGGTGACACTGCATTAAG-
upper sequence: GLYMA18G06770.1 (Glycine max), 3'ss of exon 17
lower sequence: PP1S235_92V6.1 (Physcomitrella patens), 3'ss of exon 14
gtaagtatttttgaaggatgtagttaaataccaaaacccatggatgctggaactaagctaattaactagtttttctatattgacccatacatttctatgaacctaaat-ttatgttctgcagGTAAATACACATCTTACCCCACGCCCAATTTTACTTACTCGACATGGGGAAAGTCAGGATAATGTGAGAGGCAGAATTGGAGGGGATACTGCAATAAGG
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gtaagacctcttgt--gctcttgttct-ccccaataccataacatcatgg---tagtccaagcaaggcgtaaccctgaagttgtat-tgaaattgtattaacgacagtattgtatttt-tagGTCAATACTCATATCACTCCACGGCCAATATTTCTTACTCGACATGGTGAAAGTGAGGATAATGTGAGGGGTCGTATTGGAGGAGATCCTGTACTTAG-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17964344|gb|BM271080.1|BM271080EST: GTGAATAATATCAGTGGTTACCTTCCTGGCCGAATTGTCTTTTTCTTG GTAAATACACATCTTACCCCACGCCCAATTTTACTTACTCGACATGGGGAA
genomic: GTGAATAATATCAGTGGTTACCTTCCTGGCCGAATTGTCTTTTTCTTGgtaagtattt ... tgttctgcagGTAAATACACATCTTACCCCACGCCCAATTTTACTTACTCGACATGGGGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagtttttctatattgacccatacatttctatgaacctaaatttatgttctgcagGTAAATACACATCTTACCCCACGCCCAATTTTACTTACTCGACATGGGGAAAGTCAGGATAATGTGAGAGGCAGAATTGGAGGGGATACTGCAATAAGG
taaatttatgttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtatttttgaaggatgtagttaaataccaaaacccatggatgctggaactaagctaattaactagtttttctatattgacccatacatttctatgaacctaaatttatgttctgcagGTAAATACACATCTTACCCCACGCCCAATTTTACTTACTCGACATGGGGAAAGTCAGGATAATGTGAGAGGCAGAATTGGAGGGGATACTGCAATAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG