1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...cgtgtcctcaacaaatagtaatagtaattggccaattgcatccaatctatagttttactttgtaattttgacctgttacaattggtaccatgatctgcagTCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCTCATGAAGGTCTTATTGCGGCATTGGCGGTTTCTACTGTAAATGGTTTGG
species | Glycine max |
transcript | GLYMA17G30910.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAG TCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCTEST: gi|151400773|gb|EV270587.1|EV270587
genomic: GTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAGgcaagtctac ... tgatctgcagTCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCT
EST: GTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAG TCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCTEST: gi|16341903|gb|BI967498.1|BI967498
genomic: GTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAGgcaagtctac ... tgatctgcagTCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCT
EST: GTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAG TCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCTEST: gi|31468697|gb|CD410725.1|CD410725
genomic: GTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAGgcaagtctac ... tgatctgcagTCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCT
EST: GTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAG TCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACAATCTGCTEST: gi|16348259|gb|BI973854.1|BI973854
genomic: GTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAGgcaagtctac ... tgatctgcagTCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCT
EST: GTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAG TCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCTEST: gi|193708003|gb|FK641961.1|FK641961
genomic: GTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAGgcaagtctac ... tgatctgcagTCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCT
EST: GTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAG TCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCT
genomic: GTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAGgcaagtctac ... tgatctgcagTCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCT
tctatagttttactttgtaattttgacctgttacaattggtaccatgatctgcagTCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCTCATGAAGGTCTTATTGCGGCATTGGCGGTTTCTACTGTAAATGGTTTGG
ttttgac putative branch site (score: 3)
ttttactttgtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtgtcctcaacaaatagtaatagtaattggccaattgcatccaatctatagttttactttgtaattttgacctgttacaattggtaccatgatctgcagTCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCTCATGAAGGTCTTATTGCGGCATTGGCGGTTTCTACTGTAAATGGTTTGG
- - - ctcaaca
- - - - - - - - - - - - - - - - - - -gcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacctg