Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaattttcatgcttcagtgtatgcatggtgtctttctattttggagcaattcactattttttaacttatgttttcctcgtttcccatttgttagGCTGTTATCCATGTCACCAGATGCAAAAGTTGAGAGAATAGCTTCTCTTGAGAACATGTTGTGCATGTCCTCAGTTGCTTTGAAAGCCATGGCTTCACAA

Basic information

species Glycine max
transcript GLYMA17G18540.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299792|gb|FG990058.1|FG990058
EST:     CGGTTTTCAGATGGGCAGACTATTCCCAAAGGAAAGAGCAAATATTTGAG                         GCTGTTATCCATGTCACCAGATGCAAAAGTTGAGAGAATAGCTTCTCTTGA
genomic: CGGTTTTCAGATGGGCAGACTATTCCCAAAGGAAAGAGCAAATATTTGAGgtagaatttt ... catttgttagGCTGTTATCCATGTCACCAGATGCAAAAGTTGAGAGAATAGCTTCTCTTGA
EST: gi|254338075|gb|GR849707.1|GR849707
EST:     CGGTTTTCAGATGGGCAGACTATTCCCAAAGGAAAGAGCAAATATTTGAG                         GCTGTTATCCATGTCACCAGATGCAAAAGTTGAGAGAATAGCTTCTCTTGA
genomic: CGGTTTTCAGATGGGCAGACTATTCCCAAAGGAAAGAGCAAATATTTGAGgtagaatttt ... catttgttagGCTGTTATCCATGTCACCAGATGCAAAAGTTGAGAGAATAGCTTCTCTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggagcaattcactattttttaacttatgttttcctcgtttcccatttgttagGCTGTTATCCATGTCACCAGATGCAAAAGTTGAGAGAATAGCTTCTCTTGAGAACATGTTGTGCATGTCCTCAGTTGCTTTGAAAGCCATGGCTTCACAA
                   ttttaac  putative branch site (score: 2)
                               ttttcctcgtttccca  putative PPT
        aattcactatttttta  TA-rich tract