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...tttccatttccacaagaccttttgcttgcttacttagtgaattttttaaaaaatgaatctgtggctaatcaagttcctttgtgaatatcaatcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTACTGGCAGATATTTGCGCGATGTATGGTGATGATATCTGAATGCAAGCC
species | Glycine max |
transcript | GLYMA17G07050.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAG GGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTEST: gi|15203188|gb|BI425956.1|BI425956
genomic: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAGgtatatgttt ... atcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
EST: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAG GGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTEST: gi|15202467|gb|BI425417.1|BI425417
genomic: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAGgtatatgttt ... atcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
EST: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAG GGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTEST: gi|21594304|gb|BQ610119.1|BQ610119
genomic: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAGgtatatgttt ... atcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
EST: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAG GGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTEST: gi|214006112|gb|DB990465.1|DB990465
genomic: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAGgtatatgttt ... atcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
EST: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAG GGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTEST: gi|193515096|gb|FK467506.1|FK467506
genomic: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAGgtatatgttt ... atcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
EST: GATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAG GGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTEST: gi|8402113|gb|BE057747.1|BE057747
genomic: GATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAGgtatatgttt ... atcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
EST: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAG GGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTEST: gi|16346078|gb|BI971673.1|BI971673
genomic: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAGgtatatgttt ... atcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
EST: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAG GGTTCTCTCGATATTTTCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTEST: gi|58024838|gb|CX711579.1|CX711579
genomic: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAGgtatatgttt ... atcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
EST: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAG GGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTEST: gi|7147143|gb|AW509065.1|AW509065
genomic: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAGgtatatgttt ... atcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
EST: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAG GGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTEST: gi|254341893|gb|GR853030.1|GR853030
genomic: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAGgtatatgttt ... atcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
EST: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAG GGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTEST: gi|254346951|gb|GR856673.1|GR856673
genomic: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAGgtatatgttt ... atcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
EST: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAG GGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTEST: gi|58020989|gb|CX707731.1|CX707731
genomic: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAGgtatatgttt ... atcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
EST: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAG GGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTEST: gi|14258698|gb|BG881606.1|BG881606
genomic: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAGgtatatgttt ... atcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
EST: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAG GGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTEST: gi|9258034|gb|BE346181.1|BE346181
genomic: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAGgtatatgttt ... atcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
EST: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAG GGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
genomic: GCATGGCCAGGGATGTACACCGCGCCCTGCACACAATTTTGCAAGAGCAGgtatatgttt ... atcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACT
ttaaaaaatgaatctgtggctaatcaagttcctttgtgaatatcaatcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTACTGGCAGATATTTGCGCGATGTATGGTGATGATATCTGAATGCAAGCC
ggctaat putative branch site (score: 3)
aatatcaatcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttccatttccacaagaccttttgcttgcttacttagtgaattttttaaaaaatgaatctgtggctaatcaagttcctttgtgaatatcaatcatatcagGGTTCTCTCGATAGTTCCAAGGCTGAGAGCATGGTAAAGAATCTACAAACTACTGGCAGATATTTGCGCGATGTATGGTGATGATATCTGAATGCAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- -ccatttc
- - - - - - - - - - - -gcttgct
- - - - - - - - - - - - - - - - cttagtg
- - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggcta