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gtgagtgttcgtataattcatgtcttatatctttgtcaatataataatgctgacttgtctgtctacagGGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAGCAATGTGGGTTCCTGAGACCAAGGGAAGAACATTGGAAGAAATTCAGTT
species | Glycine max |
transcript | GLYMA16G25310.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GTGGGGGATCACGATGACTGCTAACTTGCTTTTGAATTGGAGCAGTGGAG GGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAGEST: gi|22523687|gb|BU082498.1|BU082498
genomic: GTGGGGGATCACGATGACTGCTAACTTGCTTTTGAATTGGAGCAGTGGAGgtgagtgttc ... ctgtctacagGGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAG
EST: GTGGGGGATCACGATGACTGCTAACTTGCTTTTGAATTGGAGCAGTGGAG GGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAGEST: gi|16280886|gb|BI944198.1|BI944198
genomic: GTGGGGGATCACGATGACTGCTAACTTGCTTTTGAATTGGAGCAGTGGAGgtgagtgttc ... ctgtctacagGGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAG
EST: GTGGGGGATCACGATGACTGCTAACTTGCTTTTGAATTGGAGCAGTGGAG GGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAGEST: gi|193378722|gb|FK343859.1|FK343859
genomic: GTGGGGGATCACGATGACTGCTAACTTGCTTTTGAATTGGAGCAGTGGAGgtgagtgttc ... ctgtctacagGGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAG
EST: GT-GGGGATCACGATGACTGCTAACTTGCTTTTGAATTGGAGCAGTGGAG GGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAGEST: gi|26057282|gb|CA800196.1|CA800196
genomic: GTGGGGGATCACGATGACTGCTAACTTGCTTTTGAATTGGAGCAGTGGAGgtgagtgttc ... ctgtctacagGGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAG
EST: GTGGGGGATCACGATGACTGCTAACTTGCTTTTGAATTGGAGCAGTGGAG GGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAGEST: gi|192319001|gb|FK009053.1|FK009053
genomic: GTGGGGGATCACGATGACTGCTAACTTGCTTTTGAATTGGAGCAGTGGAGgtgagtgttc ... ctgtctacagGGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAG
EST: GTGGGGGATCACGATGACTGCTAACTTGCTTTTGAATTGGAGCAGTGGAG GGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAGEST: gi|192319000|gb|FK009052.1|FK009052
genomic: GTGGGGGATCACGATGACTGCTAACTTGCTTTTGAATTGGAGCAGTGGAGgtgagtgttc ... ctgtctacagGGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAG
EST: GTGGGGGATCACGATGACTGCTAACTTGCTTTTGAATTGGAGCAGTGGAG GGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAG
genomic: GTGGGGGATCACGATGACTGCTAACTTGCTTTTGAATTGGAGCAGTGGAGgtgagtgttc ... ctgtctacagGGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAG
taattcatgtcttatatctttgtcaatataataatgctgacttgtctgtctacagGGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAGCAATGTGGGTTCCTGAGACCAAGGGAAGAACATTGGAAGAAATTCAGTT
tgctgac putative branch site (score: 2)
cttgtct CT-rich tract
ttatatctttgtcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgttcgtataattcatgtcttatatctttgtcaatataataatgctgacttgtctgtctacagGGACATTTACAATCTACACAGTCGTAGCTGCCTTTACTATAGCTTTTATAGCAATGTGGGTTCCTGAGACCAAGGGAAGAACATTGGAAGAAATTCAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA