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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattaatactgcattcaatttttttaaaagacatattttgtgtttatgatggacaatatgaatgagagtaatttgtgtgtagtatgactgcactataaaggacttcctatatagtttggctaaaatggtgagattattaggtttctaaccctttgacccttcttagATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG

Basic information

species Glycine max
transcript GLYMA16G19580.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192302190|gb|FG996612.1|FG996612
EST:     GGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATT                         ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG
genomic: GGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATTgtaagtatta ... cccttcttagATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG
EST: gi|58014702|gb|CX701444.1|CX701444
EST:     GGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATT                         ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG
genomic: GGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATTgtaagtatta ... cccttcttagATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG
EST: gi|192302191|gb|FG996613.1|FG996613
EST:     GGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATT                         ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG
genomic: GGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATTgtaagtatta ... cccttcttagATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG
EST: gi|207683288|gb|GD666513.1|GD666513
EST:     AATGCAAATCTGCAAAATT                         ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGACATAGATATGAG
genomic: AATGCAAATCTGCAAAATTgtaagtatta ... cccttcttagATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG
EST: gi|22523089|gb|BU081900.1|BU081900
EST:     GGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATT                         ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG
genomic: GGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATTgtaagtatta ... cccttcttagATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtttggctaaaatggtgagattattaggtttctaaccctttgacccttcttagATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG
                                     ccctttgacccttctt  CT-rich tract
                   agattatta  TA-rich tract