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...aaggaaatcatagaaagtgtgttgctaaaattcctctatattaaatttgtattactatatgctaacatagatacatggacctggcttgttctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACCGCACCATTTTTGGCTCTCTCT
species | Glycine max |
transcript | GLYMA16G10820.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAG TTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTTEST: gi|51336439|gb|CO980305.1|CO980305
genomic: CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
EST: CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAG TTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTTEST: gi|31307289|gb|CD392492.1|CD392492
genomic: CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
EST: CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAG TTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTTEST: gi|15202383|gb|BI425372.1|BI425372
genomic: CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
EST: ATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAG TTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTTEST: gi|31309502|gb|CD394705.1|CD394705
genomic: ATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
EST: CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAG TTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTTEST: gi|31475258|gb|CD417286.1|CD417286
genomic: CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
EST: CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAG TTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
genomic: CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
tttgtattactatatgctaacatagatacatggacctggcttgttctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACCGCACCATTTTTGGCTCTCTCT
tgctaac putative branch site (score: 1)
cttgttctctttac putative PPT
attactatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggaaatcatagaaagtgtgttgctaaaattcctctatattaaatttgtattactatatgctaacatagatacatggacctggcttgttctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACCGCACCATTTTTGGCTCTCTCT
- - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgtt