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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttaccttcatgaacacctctactatttagttagttatacaaaaatagcatcatatatcttaagtcttgcttcaatgccttgtccattcagGCCAACAATGCATACATCTTCCCCGGCTTTGGTCTTGGGTTGGTAATCTCAGGAGCAATCAGAGTGCATGACGATATGCTTCTAGCAGCTTGTAAGTGGA

Basic information

species Glycine max
transcript GLYMA16G08460.2
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15203110|gb|BI425878.1|BI425878
EST:     GTCCATTTGATCCTGTAGAATACAAGGGCAAAGTGTACTATTCTGGCCAG                         GCCAACAATGCATACATCTTCCCCGGCTTTGGTCTTGGGTTGGTAATCTCA
genomic: GTCCATTTGATCCTGTAGAATACAAGGGCAAAGTGTACTATTCTGGCCAGgttttacctt ... gtccattcagGCCAACAATGCATACATCTTCCCCGGCTTTGGTCTTGGGTTGGTAATCTCA
EST: gi|6566798|gb|AW234430.1|AW234430
EST:     GTCCATTTGATCCTGTAGAATACAAAGGCAAAGTGTACTATTCTGGCCAG                         GCCAACAATGCATACATCTTCNCCCG-CTNTGGTCTTGGGTTG
genomic: GTCCATTTGATCCTGTAGAATACAAGGGCAAAGTGTACTATTCTGGCCAGgttttacctt ... gtccattcagGCCAACAATGCATACATCTTC-CCCGGCTTTGGTCTTGGGTTG
EST: gi|298199413|gb|HO042776.1|HO042776
EST:     GTCCATTTGATCCTGTAGAATACAAGGGCAAAGTGTACTATTCTGGCCAG                         GCCAACAATGCATACATCTTCCCCGGCTTTGGTCTTGGGTTGGTAATCTCA
genomic: GTCCATTTGATCCTGTAGAATACAAGGGCAAAGTGTACTATTCTGGCCAGgttttacctt ... gtccattcagGCCAACAATGCATACATCTTCCCCGGCTTTGGTCTTGGGTTGGTAATCTCA
EST: gi|19453207|gb|BM954617.1|BM954617
EST:     GTCCATTTGATCCTGTAGAATACAAGGGCAAAGTGTACTATTCTGGCCAG                         GCCAACAATGCATACATCTTCCCCGGCTTTGGTCTTGGGTTGGTAATCTCA
genomic: GTCCATTTGATCCTGTAGAATACAAGGGCAAAGTGTACTATTCTGGCCAGgttttacctt ... gtccattcagGCCAACAATGCATACATCTTCCCCGGCTTTGGTCTTGGGTTGGTAATCTCA
EST: gi|7326720|gb|AW620518.1|AW620518
EST:     GTCCATTTGATCCTGTAGAATACAAGGGCAAAGTGTACTATTCTGGCCAN                         GCCAACAATGCATACATCTT
genomic: GTCCATTTGATCCTGTAGAATACAAGGGCAAAGTGTACTATTCTGGCCAGgttttacctt ... gtccattcagGCCAACAATGCATACATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacaaaaatagcatcatatatcttaagtcttgcttcaatgccttgtccattcagGCCAACAATGCATACATCTTCCCCGGCTTTGGTCTTGGGTTGGTAATCTCAGGAGCAATCAGAGTGCATGACGATATGCTTCTAGCAGCTTGTAAGTGGA
                                         ccttgtcc  CT-rich tract
             atcatatatcttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttttaccttcatgaacacctctactatttagttagttatacaaaaatagcatcatatatcttaagtcttgcttcaatgccttgtccattcagGCCAACAATGCATACATCTTCCCCGGCTTTGGTCTTGGGTTGGTAATCTCAGGAGCAATCAGAGTGCATGACGATATGCTTCTAGCAGCTTGTAAGTGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA