1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtacaatattgagccttgatttttaattaatattttttgctataaacaaaaccctataactgaaatgagtaattctctgcagTACTTTGCTAATTCTATATCTCGGCTTTTGCTCCCCGTTGATGGTGCACATGCTGCTGCTTGTGAGGAAATGGCTACAGCAATGTCAAGTGCAGAGGCTG
species | Glycine max |
transcript | GLYMA16G01660.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TTATGATTGCTGTACAACGTTCTGGAAGCAGTGTAGCTATTATTCAACAA TACTTTGCTAATTCTATATCTCGGCTTTTGCTCCCCGTTGATGGTGCACATEST: gi|19269159|gb|BM885415.1|BM885415
genomic: TCATGATTGCTGTGCAACGTTCTGGAAGCAGTGTAGCTATTATTCAACAAgtacaatatt ... ttctctgcagTACTTTGCTAATTCTATATCTCGGCTTTTGCTCCCCGTTGATGGTGCACAT
EST: TCATGATTGCTGTGCAACGTTCTGGAAGCAGTGTAGCTATTATTCAACAA TACTTTGCTAATTCTATATCTCGGCTTTTGCTCCCCGTTGATGGTGCACATEST: gi|15287423|gb|BI471314.1|BI471314
genomic: TCATGATTGCTGTGCAACGTTCTGGAAGCAGTGTAGCTATTATTCAACAAgtacaatatt ... ttctctgcagTACTTTGCTAATTCTATATCTCGGCTTTTGCTCCCCGTTGATGGTGCACAT
EST: TCATGATTGCTGTGCAACGTTCTGGAAGCAGTGTAGCTATTATTCAACAA TACTTTGCTAATTCTATATCTCGGCTTTTGCTCCCCGTTGATGGTGCACAT
genomic: TCATGATTGCTGTGCAACGTTCTGGAAGCAGTGTAGCTATTATTCAACAAgtacaatatt ... ttctctgcagTACTTTGCTAATTCTATATCTCGGCTTTTGCTCCCCGTTGATGGTGCACAT
taatattttttgctataaacaaaaccctataactgaaatgagtaattctctgcagTACTTTGCTAATTCTATATCTCGGCTTTTGCTCCCCGTTGATGGTGCACATGCTGCTGCTTGTGAGGAAATGGCTACAGCAATGTCAAGTGCAGAGGCTG
ctataac putative branch site (score: 3)
ttctctgc putative PPT
ttttttgctataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatattgagccttgatttttaattaatattttttgctataaacaaaaccctataactgaaatgagtaattctctgcagTACTTTGCTAATTCTATATCTCGGCTTTTGCTCCCCGTTGATGGTGCACATGCTGCTGCTTGTGAGGAAATGGCTACAGCAATGTCAAGTGCAGAGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT