1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtgaattttgcttcctgtttagtacttgttggtctcattccttgtcattaatcacgacatgcatatcatatccacactgcagTGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAGCTAGAAGCACTAAGGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCG
species | Glycine max |
transcript | GLYMA15G01980.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAG TGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAGEST: gi|151408005|gb|EV277820.1|EV277820
genomic: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAGgtgaattttg ... cacactgcagTGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAG
EST: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAG TGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAGEST: gi|120530587|gb|EH258720.1|EH258720
genomic: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAGgtgaattttg ... cacactgcagTGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAG
EST: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAG TGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAGEST: gi|21602173|gb|BQ612504.1|BQ612504
genomic: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAGgtgaattttg ... cacactgcagTGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAG
EST: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGGCAAAATGACAGAACAG TGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAGEST: gi|15813354|gb|BI785629.1|BI785629
genomic: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAGgtgaattttg ... cacactgcagTGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAG
EST: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAG TGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAGEST: gi|151407143|gb|EV276958.1|EV276958
genomic: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAGgtgaattttg ... cacactgcagTGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAG
EST: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAG TGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAGEST: gi|17400350|gb|BM177132.1|BM177132
genomic: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAGgtgaattttg ... cacactgcagTGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAG
EST: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAG TGTGAGAAGTTGEST: gi|10843601|gb|BF067198.1|BF067198
genomic: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAGgtgaattttg ... cacactgcagTGTGAGAAGTTG
EST: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAG TGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACCATCAGAG
genomic: AATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAGgtgaattttg ... cacactgcagTGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAG
gttggtctcattccttgtcattaatcacgacatgcatatcatatccacactgcagTGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAGCTAGAAGCACTAAGGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCG
cattaat putative branch site (score: 3)
atatcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaattttgcttcctgtttagtacttgttggtctcattccttgtcattaatcacgacatgcatatcatatccacactgcagTGTGAGAAGTTGCGTGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAGCTAGAAGCACTAAGGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT