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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatctttttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcagACTGCTAAGGAATATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCAT

Basic information

species Glycine max
transcript GLYMA14G37510.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 19
gtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatctttttttggtttttt-tataatttcaataaaagaatcttactagtacatgatttgcagACTGCTAAGGAATATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCAT
                            || | || | | | |   ||| ||  |    ||||| |   || |   ||   |||     |  |     ||  ||     || ||||| |||| || ||||| | ||| ||||| || |||||||| ||||| ||||| |||||||||||||| || || || || || |||||||||||||| || |
---------------------------gtatttttgctacgtttagtttgaccttcccttttttgtcacttctcacattggttctgattattatcgaaacatgtgtcatatctgcagGCTGCCAAAGAATACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTT

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 19
gtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatctttttttggtttttttataatttcaataaaagaatcttactagtacatg----atttgcagACTGCTAAGGAATATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCAT
                                || |     | ||||     ||   ||  ||||| ||   ||   |  ||   |   |  ||  |   |  |  ||    || ||||| |||| || ||||| | ||| ||||| || |||||||| ||||| ||||| |||||||||||||| || || || || || |||||||||||||| || |
--------------------------------gtatttgctacatttagtttaaccttcccttttttgtcacttctcacattggttctgattattatcgaaacatgtgtcatatctgcagGCTGCCAAAGAATACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTT

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G477336_T01 (Zea mays), 3'ss of exon 6
gtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatctttttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcagACTGCTAAGGAATATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCAT
        | ||    |  |   |  |      | |  |  |     ||  || |||| || ||     ||  || |||||    | |||   ||||    | ||||    ||||| | || || ||||| | ||| ||||| || |||||||| ||||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | |
--------tcagtttcttatgccccctccccc-tctgtaccaacccattggcatttattttcttccttcttggttctaattattgtgaaa---tcttggggg-acata---tgcagGCCGCGAAAGAATACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCT

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G352837_T02 (Zea mays), 3'ss of exon 6
gtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatc-tttttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcagACTGCTAAGGAATATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCAT
     |||||   | |  ||  |   |||     | ||    | |    | | |||  | ||| |||  ||  ||  |  ||  ||| |  |     |  | |   |  || ||||| | || || ||||| | ||| ||||| || |||||||| ||||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | |
-----gtattcctgttcagt--ttcttatgcccctccccctctgtaccaacccattggcatttattttcttccttcttggttctaattattgggaaatcttgggggac-atatgcagGCCGCGAAAGAATACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCT

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 17
gtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatctttttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcagACTGCTAAGGAATATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCAT
|||   ||||    | |    ||    ||  |  |||||   || |  |  |  |   || ||   |     | ||||| ||   | |||    | |  | | ||||    || || |||| || ||||||| |||||| || || |||||||| ||||| ||| | ||||| |||||||| || ||||| || || ||||||||||||||  | |
gtaa-atattgctccgttcctgtaaacatttttgttccaccctactgctttccctcccctgttcaag-----tatataacttttgtcaaa----cctg-tggcacat---ctgtagGCTGCGAAAGAATATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCT

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G591258_T01 (Zea mays), 3'ss of exon 10
gtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatc-tttttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcagACTGCTAAGGAATATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCAT
     |||||   | |  ||      |      |  || |  | |    | | |||  | ||| |||  ||  ||  || ||  ||| |  |     |  | |   |  || ||||| | || || ||||| | ||| ||||| || |||||||| ||||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | |
-----gtattcctgttcagtttcttatgccccctccccctc-tgtaccaacccattggcatttattttcttccttcttagttctaattattgtgaaatcttgggggac-atatgcagGCCGCGAAAGAATACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCT

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G102756_T01 (Zea mays), 3'ss of exon 3
gtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatctttttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcagACTGCTAAGGAATATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCAT-------------
                                                                 ||   || |  |||||    |||||     ||    | ||||    ||||| | || || ||||| | ||| ||||| || |||||||| | ||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | |             
-----------------------------------------------------------------tgaaattatc-taattattgtaaaa----ttttgggggacat---ctgcaggccgcgaaagaataatctgagcagctaggggttgatgcttccatcaaattatttgagCAATTCAAATCTTATGAGGGTCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAG

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G430947_T01 (Zea mays), 3'ss of exon 5
gtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatc-tttttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcagACTGCTAAGGAATATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCAT
     |||||   | |  ||      |      |  || |  | |    | | |||  | ||| |||  ||  ||  |  ||  ||| |  |     |  | |   |  || ||||| |  | || ||||| | ||| ||||| || |||||||| ||||| ||| | |||||||||||||| || ||||| |  || ||||||||||||||  | |
-----gtatttctgttcagtttcttatgccccctccccctc-tgtaccaacccattggcatttcttttcttccttcttggttctaattattgtgaaatcttgggggac-atctgcagGCCACGAAAGAATACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGACCTTTACTTTTTCTTGGGATCTT

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 19
gtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatctttttttggtttttttataatttcaataaaa-gaatcttactagtacatgatttgcagACTGCTAAGGAATATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCAT
                                  |   ||  | ||||  | |  |     || ||| || ||  | | |   || |||  |   || ||||   |||  | |||||||||| ||||| |||| ||||||| |||||||||| ||||| || ||||| |||||||| |||||||| ||||||||| ||||||||||||||||  |||
---------------------------------gtaaaatagtgttttgtatatgtg---attattgattattccacattcataaaaaattgtggctcactaagtcatt-tgtgcagACTGCCAAGGAGTATTCTGAACAGTTGGGTGTTGAGGCATGTATAAAACTGTTTGAGCAGTTCAAGTCTTATGAAGGATTATACTTTTTCTTGGGGTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcagACTGCTAAGGAATATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCAT
                               atcttac  putative branch site (score: 3)
       tttttttataatttca  TA-rich tract