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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggactctccaaatgtgttttattcttgcactttctctatgttaatcttaaaatcaaacccttaattgattgcattattcttggtgcagCATTACACAGAATTACCAGACATCAAACGCGTGATTGTTAATACACATGCAATTGAACCTCAG

Basic information

species Glycine max
transcript GLYMA14G06340.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 17
gtaaggactctccaaatgtgttttattcttgcactttctctatgttaatcttaaaatcaaacccttaattgattgcattat-tcttggtgcagCATTACACAGAATTACCAGACATCAAACGCGTGATTGTTAATACACATGCAATTGAACCTCAG
|| || ||  |     ||| ||   ||  |    ||| ||| ||    |||             |||||| |   |||||| |  || ||||||||||||||||||||||||| ||||| || || || || ||||| ||||| ||||| || |||
gtcagtacctttttgttgttttggtttacttttttttttctttgcctgtctg-----------tttaattaa---cattatattgtgatgcagCATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAG

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 17
gtaaggactctccaaatgtgttttattcttgcactttctctatgttaatcttaaaatcaaacccttaattgattgcattat-tcttggtgcagCATTACACAGAATTACCAGACATCAAACGCGTGATTGTTAATACACATGCAATTGAACCTCAG
|| || ||  |     ||| |||  ||       ||| ||| ||    |||             |||||| |   |||||| |  || ||||||||||||||||||||||||| ||||| || || || || ||||| ||||| ||||| || |||
gtcagtacctttttgttgt-tttggtttactttttttttctttgcctgtctg-----------tttaattaa---cattatattgtgatgcagCATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAG

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 17
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 17
gtaaggactctccaaatgtgttttattcttgcactttctctatgttaatcttaaaatcaaacccttaa-ttgattgcattattcttggtgcagCATTACACAGAATTACCAGACATCAAACGCGTGATTGTTAATACACATGCAATTGAACCTCAG
    |   |  |  ||||| || | |  |     |  |   ||     | ||    |    ||  ||| ||  || | || | ||| |||||||||||| |||| ||||| || |||||||| || ||||| || |||||||| ||||| || |||
----gtttttgctcaatgtcttctttaatattcttggcctaatagatgtatttttttttcccctctaacttcgtttccttttgctttgtgcagCATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAG

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 17
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 17
---gtaaggactctccaaatgtgttttattct----tgcactttctctatgttaatcttaaa---atcaaac-ccttaattgattgcattattcttggtgcagCATTACACAGAATTACCAGACATCAAACGCGTGATTGTTAATACACATGCAATTGAACCTCAG
     |  |  |||   |||   ||||||| |    |  || || | |||  | |  | |||   || | ||  |||  || |     ||||  || ||||||||||| || || || ||||| || |||||||| ||||| ||||||||||||||||| || |||
gtgaaattggttcttgcaattcattttattttattttttaccttttttattgttacatgaaattaattatacgtcttggttaaaacacttatattttgtgcagCATTATACTGAGTTGCCAGATATAAAACGCGTCATTGTGAATACACATGCAATTGAGCCACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193597617|gb|FK550073.1|FK550073
EST:     GTATTGCCCAACTTTGTGAAAAAGCTGGCCTTTATGTGCGAGCTTTGCAA                         CATTACACAGAATTACCAGACATCAAACGCGTGATTGTTAATACACATGCA
genomic: GTATTGCCCAACTTTGTGAAAAAGCTGGCCTTTATGTGCGAGCTTTGCAAgtaaggactc ... cttggtgcagCATTACACAGAATTACCAGACATCAAACGCGTGATTGTTAATACACATGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctatgttaatcttaaaatcaaacccttaattgattgcattattcttggtgcagCATTACACAGAATTACCAGACATCAAACGCGTGATTGTTAATACACATGCAATTGAACCTCAG
                                        ttattctt  CT-rich tract
       ttaatcttaaaatcaa  TA-rich tract