1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtgattgcagtgccttttctgagaattacataaatcatgatcagaaatttttagcacacattttttttttctaacctttgatgctctcattctttactgggtgtagGAGTGTACTGCCTATGAAGAAAAACAACTACTGGAGAAAGTGGCAGAAATGCTAGCAAGTTCAAATGCTAGAAAGAAACAATTG
species | Glycine max |
transcript | GLYMA13G40580.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CACAATTGGTCAATGATCAGAAATTGTGTGAACTTGAGAAGAAGTTTGAG GAGTGTACTGCCTATGAAGAAAAACAACTACTGGAEST: gi|12489981|gb|BG043502.1|BG043502
genomic: CACAATTGGTCAATGATCAGAAATTGTGTGAACTTGAGAAGAAGTTTGAGgtgattgcag ... ctgggtgtagGAGTGTACTGCCTATGAAGAAAAACAACTACTGGA
EST: CACAATTGGTCAATGATCAGAAATTGTGTGAACTTGAGAAGAAGTTTGAG GAGTGTACTGCCTATGAAGAAAAACAACTACTGGAGAAAGTGGCAGAAATG
genomic: CACAATTGGTCAATGATCAGAAATTGTGTGAACTTGAGAAGAAGTTTGAGgtgattgcag ... ctgggtgtagGAGTGTACTGCCTATGAAGAAAAACAACTACTGGAGAAAGTGGCAGAAATG
tagcacacattttttttttctaacctttgatgctctcattctttactgggtgtagGAGTGTACTGCCTATGAAGAAAAACAACTACTGGAGAAAGTGGCAGAAATGCTAGCAAGTTCAAATGCTAGAAAGAAACAATTG
ctctcattctttact CT-rich tract
acattttttttttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattgcagtgccttttctgagaattacataaatcatgatcagaaatttttagcacacattttttttttctaacctttgatgctctcattctttactgggtgtagGAGTGTACTGCCTATGAAGAAAAACAACTACTGGAGAAAGTGGCAGAAATGCTAGCAAGTTCAAATGCTAGAAAGAAACAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA