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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtagttttgtttactcttggtaactgttgtaatttaatgtgatttatgtcttgtccatcaaccaaaatatctagtaatattttactttcttaactaatagcaactttgtctgttgtatgatctgcagGATGTCTACTTTGATGATGACTCTGCTCAAGTAGTCATATCATCCCTCAGACTCAGTGACGATCAAGGGAG

Basic information

species Glycine max
transcript GLYMA13G40050.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40050.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 17
gtagtagttttgtttactcttggtaactgttgtaatttaatgtgatttatgtcttgtccatcaaccaaaatatctagtaatattttactttcttaa--ctaatagcaactttgtctgttgtatgatctgcagGATGTCTACTTTGATGATGACTCTGCTCAAGTAGTCATATCATCCCTCAGACTCAGTGACGATCAAGGGAG
                            |  | ||   ||||  |   || | |||  |     |     |||||  | |||||||| ||| |      | ||   |      | ||||  || |  ||||||||||||||||||||||||| |||||| ||||||| || |||||||| |||||  |||| || ||||||||
----------------------------ggagaaaaagaatggaa---atcttttgaactctgtctcttttatctttttatattttaatttataggatttgatcctacaaaaatgtgtta-ataaaatgcagGATGTCTACTTTGATGATGAATCTGCTGAAGTAGTGATCTCATCCCTGAGACTTGGTGATGACCAAGGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254326016|gb|GR838897.1|GR838897
EST:     GAACGTGGCAACCTTGATCGAGATGATGAG                         GATGTCTACTTTGATGATGACTCTGCTCAAGTAGTCATATCATCCCTCAGA
genomic: GAACGTGGCAACCTTGATCGAGATGATGAGgtagtagttt ... tgatctgcagGATGTCTACTTTGATGATGACTCTGCTCAAGTAGTCATATCATCCCTCAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtaatattttactttcttaactaatagcaactttgtctgttgtatgatctgcagGATGTCTACTTTGATGATGACTCTGCTCAAGTAGTCATATCATCCCTCAGACTCAGTGACGATCAAGGGAG
                   aactaat  putative branch site (score: 2)
     tattttactttcttaa  TA-rich tract