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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacgaaatcagcgtgaggatttcagtgacatggtggcagaggtgtgttacatttaattttcatatcttacaaactcacgcatgttgttgttgttattattaataacttcagtctttatttgtatatttaatcacgtaaccaactggtgcagaatgagaagaggaagaagagAAAGATGCAAGAAAAGGAGGGCAAGTCCAAGAGGAATAAGGAGTTTAAGTTCTAAAGGTGGTTTCGTGTCTTTTTCTTTCGCAGAAAAAATGGGGGACCC

Basic information

species Glycine max
transcript GLYMA13G25110.2
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G25110.2 (Glycine max), 3'ss of exon 17
lower sequence: Vv00s0818g00010.t01 (Vitis vinifera), 3'ss of exon 8
gttacgaaatcagcgtgaggatttcagtgacatggtggcagaggtgtgttacatttaattttcatatcttacaaactcacgcatgttgttgttgttattattaataacttcagtctttatttgtatatttaatcacgtaaccaactggtgcaga-atgagaagaggaagaagagAAAGATGCAAGAAAAGGAGGGCAAGTCCAAGAGGAATAAGGAGTTTAAGTTCTAAAGGTGGTTTCGTGTCTTTTTCTTTCGCAGAAAAAATGGGGGACCC
                                                                        ||      |  | ||| |  | ||||  |   | | |    ||   | | | ||  || || || |      ||    |||  | ||| ||   | | ||    ||| |||    |   || |  ||      ||  | | ||      ||                                                   
----------------------------------------------------------------------gtaagtg---gtgtcttgattctattatcttagtttagtattctcaacagtagcattcttcataactttggtgcctttcacagGTACGAGGAGGCAAGGGAGGAGGAGAAGCAGCGTAGTCAGCGTGAGGATTTCAGTGACATGGTTGCAGAG---------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgtatatttaatcacgtaaccaactggtgcagaatgagaagaggaagaagagAAAGATGCAAGAAAAGGAGGGCAAGTCCAAGAGGAATAAGGAGTTTAAGTTCTAAAGGTGGTTTCGTGTCTTTTTCTTTCGCAGAAAAAATGGGGGACCC
                acgtaac  putative branch site (score: 3)
     tatatttaatca  TA-rich tract