Sequence
atgc intronic sequence ATGC exonic sequencegtagtagttttgtttactcttggtaactgttgtaatttaatgtgattgatcttggggattttgagaatcaatctagctcttatgtcactgagtgatatagtcaatttgtgttgtgcatcaaccaaaatatctagtgatcttttttacttttactttcttaactaatggcaactttatctgttgtatgatttgcagGATGTCTACTTTGATAATGACTCTGCACAAGTAGTCATATCATCCCTCAGACTCAGTGACGATCAAGGGAG
Basic information
species | Glycine max |
transcript | GLYMA12G29710.2 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G29710.2 (Glycine max), 3'ss of exon 17
lower sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 17
gtagtagttttgtttactcttggtaactgttgtaatttaatgtgattgatcttggggattttgagaatcaatctagctcttatgtcactgagtgatatagtcaatttgtgttgtgcatcaaccaaaatatctagtgatcttttttacttttactttcttaactaatggcaactttatctgttgtatgatttgcagGATGTCTACTTTGATAATGACTCTGCACAAGTAGTCATATCATCCCTCAGACTCAGTGACGATCAAGGGAG
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----------------------------------------------------------------------------------------ggagaaaaagaatggaaatcttttgaactctgtctcttttatctttttatatttta-atttataggatttgatcctacaaaaa-----tgtgtta-ataaaatgcagGATGTCTACTTTGATGATGAATCTGCTGAAGTAGTGATCTCATCCCTGAGACTTGGTGATGACCAAGGGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23731914|gb|BU764104.1|BU764104EST: GAACGTGGCAACCTTGATCGAGATGATGAG GATGTCTACTTTGATAATGACTCTGCACAAGTAGTCATATCATCCCTCAGA
genomic: GAACGTGGCAACCTTGATCGAGATGATGAGgtagtagttt ... tgatttgcagGATGTCTACTTTGATAATGACTCTGCACAAGTAGTCATATCATCCCTCAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttacttttactttcttaactaatggcaactttatctgttgtatgatttgcagGATGTCTACTTTGATAATGACTCTGCACAAGTAGTCATATCATCCCTCAGACTCAGTGACGATCAAGGGAG
aactaat putative branch site (score: 2)
ttttactttcttaa TA-rich tract