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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaataaatgtgatttatgttatcaaatcatagattgtatttgatttttttttagtatttgggctggcctcaagttccagagatatattcagtaagcattattcttaaggtgtttttctctgcttttctacagACTCCGGGATCGGCTGGTTAAGATTATCACTGACTACAGGACTGAAACATCACTCAGAAATGGGTGCAATGATATCCTTAAG

Basic information

species Glycine max
transcript GLYMA11G19660.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19660.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 17
gtaagtaataaatgtgatttatgttatcaaatcatagattgtatttgatttttttttagtatttgggctggcctcaagttccagagatatattcagtaagcattattcttaaggtgt-----ttttctctgcttttctacagACTCCGGGATCGGCTGGTTAAGATTATCACTGACTACAGGACTGAAACATCACTCAGAAATGGGTGCAATGATATCCTTAAG
                                          || |||   |||  |  |  ||   ||     |   |||||  ||    ||  || ||  ||||   |||  | |     ||||||    || | | ||| ||  ||||||| || || || ||||||||||| ||||||||||||||||| || ||| |||| ||||| ||||| || |||
------------------------------------------atgtgaaaatttaatccttgttacactataagccttttccaaggactatttttgttagatttatatgtaatatctctctattttcttgagttcttttcagGCTAAGGGATCGCCTAGTCAAAATTATCACTGATTACAGGACTGAAACATCTCTTAGACATGGATGCAACGATATTCTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120492734|gb|EH220901.1|EH220901
EST:     GATCCCCTTTATATTGTAAATAAGGTTCCTAATGGGTTGGAAATACCTCG                         ACTCCGGGATCGGCTGGTTAAGATTATCACTGACTACAGGACTGAAACATC
genomic: GATCCCCTTTATATTGTAAATAAGGTTCCTAATGGGTTGGAAATACCTCGgtaagtaata ... ttttctacagACTCCGGGATCGGCTGGTTAAGATTATCACTGACTACAGGACTGAAACATC
EST: gi|23726289|gb|BU761132.1|BU761132
EST:     GATCCCCTTTATATTGTAAATAAGGTTCCTAATGGGTTGGAAATACCTCG                         ACTCCGGGATCGGCTGGTTAAGATTATCACTGACTACAGGACTGAAACATC
genomic: GATCCCCTTTATATTGTAAATAAGGTTCCTAATGGGTTGGAAATACCTCGgtaagtaata ... ttttctacagACTCCGGGATCGGCTGGTTAAGATTATCACTGACTACAGGACTGAAACATC
EST: gi|151405459|gb|EV275273.1|EV275273
EST:     GATCCCCTTTATATTGTAAATAAGGTTCCTAATGGGTTGGAAATACCTCG                         ACTCCGGGATCGGCTGGTTAAGATTATCACTGACTACAGGACTGAAACATC
genomic: GATCCCCTTTATATTGTAAATAAGGTTCCTAATGGGTTGGAAATACCTCGgtaagtaata ... ttttctacagACTCCGGGATCGGCTGGTTAAGATTATCACTGACTACAGGACTGAAACATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagatatattcagtaagcattattcttaaggtgtttttctctgcttttctacagACTCCGGGATCGGCTGGTTAAGATTATCACTGACTACAGGACTGAAACATCACTCAGAAATGGGTGCAATGATATCCTTAAG
                                tgtttttctctgcttt  CT-rich tract
                   attattcttaa  TA-rich tract