1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...gaatagagaatctttaaccagtgcctgatcattagtaattcaaggctattttcggggaagctgatatcattcttgtaatttttttgttcactatttgcagGGAACTGAGGTAGTCCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCAGGTGTATTCATAGGAAATGTGAAGGTTCTTGTGCGGTTGTCTTTTGGAC
species | Glycine max |
transcript | GLYMA11G12610.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAG GGAACTGAGGTAGTCCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCAEST: gi|120529352|gb|EH257486.1|EH257486
genomic: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAGgtaagctaat ... ctatttgcagGGAACTGAGGTAGTCCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCA
EST: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAG GGAACTGAGGTAGTCCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCAEST: gi|58018608|gb|CX705350.1|CX705350
genomic: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAGgtaagctaat ... ctatttgcagGGAACTGAGGTAGTCCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCA
EST: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAG GGAACTGAGGTAGTCCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCAEST: gi|192324349|gb|FK018325.1|FK018325
genomic: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAGgtaagctaat ... ctatttgcagGGAACTGAGGTAGTCCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCA
EST: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAG GGAACTGAGGTAGTCCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCAEST: gi|208253579|gb|GE054325.1|GE054325
genomic: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAGgtaagctaat ... ctatttgcagGGAACTGAGGTAGTCCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCA
EST: CTTCTTGGGATGCAGCCTTGTGAG GGAACTGAGGTAGTCCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCAEST: gi|22927076|gb|BU544215.1|BU544215
genomic: CTTCTTGGGATGCAGCCTTGTGAGgtaagctaat ... ctatttgcagGGAACTGAGGTAGTCCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCA
EST: CTGAAGCTGTAAATANCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAG GGAACTGAGGTAGTCCCGCNCAATTCAAGGTCACACACATGCTTGTTGTCA
genomic: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAGgtaagctaat ... ctatttgcagGGAACTGAGGTAGTCCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCA
ctattttcggggaagctgatatcattcttgtaatttttttgttcactatttgcagGGAACTGAGGTAGTCCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCAGGTGTATTCATAGGAAATGTGAAGGTTCTTGTGCGGTTGTCTTTTGGAC
agctgat putative branch site (score: 4)
tttttttgttcact putative PPT
atatcattcttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatagagaatctttaaccagtgcctgatcattagtaattcaaggctattttcggggaagctgatatcattcttgtaatttttttgttcactatttgcagGGAACTGAGGTAGTCCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCAGGTGTATTCATAGGAAATGTGAAGGTTCTTGTGCGGTTGTCTTTTGGAC
- - - - - - - - -ccagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggggaag