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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttaccattgttgtgaaacctcactatgattcttgacactactagaccattgttgtgagcttaccaagagcctcttattattttgttcattttcatttgttggtaaactaattaatatcatttctttgattactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGTTTTAGCTGTTACAACATGTAAATAGAATAGGAATGTTGAGTAATTCCCT

Basic information

species Glycine max
transcript GLYMA11G11490.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933713|gb|BU550852.1|BU550852
EST:     AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|208183660|gb|GD981546.1|GD981546
EST:     AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|254340139|gb|GR858264.1|GR858264
EST:     AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|193516320|gb|FK472560.1|FK472560
EST:     CCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: CCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|208158103|gb|GD957828.1|GD957828
EST:     AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|31310046|gb|CD395249.1|CD395249
EST:     AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|193699377|gb|FK639482.1|FK639482
EST:     CCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: CCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|193316946|gb|FK280380.1|FK280380
EST:     CCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: CCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|11274082|gb|BF324450.1|BF324450
EST:     AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|193405310|gb|FK372631.1|FK372631
EST:     AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|17021812|gb|BM092846.1|BM092846
EST:     AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcattttcatttgttggtaaactaattaatatcatttctttgattactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGTTTTAGCTGTTACAACATGTAAATAGAATAGGAATGTTGAGTAATTCCCT
                   taaactaattaatatc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtttaccattgttgtgaaacctcactatgattcttgacactactagaccattgttgtgagcttaccaagagcctcttattattttgttcattttcatttgttggtaaactaattaatatcatttctttgattactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGTTTTAGCTGTTACAACATGTAAATAGAATAGGAATGTTGAGTAATTCCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT