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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctttgcttcttaagttctgatgactgtataatgttctctttttagaatatttcttgaaccttgtctgtgtattgtgcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG

Basic information

species Glycine max
transcript GLYMA11G06720.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 17
gttctttgcttcttaa-gttctgatgactgtataatgttctctttttagaatatttcttgaaccttgtctgtgtattgtgcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG
||   |  ||| ||   ||| || |     | |  | |||| |   | |  | |||  | ||| || | |   | |  |||||||||| || || || || || ||||| |||||||| |||||||| ||||||||||||||||||
gtcagtacctttttgttgttttggtttacttttttttttctttgcct-gtctgtttaattaacattatat---tgtgatgcagCATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAG

upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 17
gttctttgcttcttaagttctgatgactgtataatgttctctttttagaatatttcttgaaccttgtctgtgt-attgtgcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG
||   |  ||| ||  ||| |  ||  |   || | || | || || |  | | | || ||       | | |  |  |||||||||| || || || || || ||||| |||||||| |||||||| ||||||||||||||||||
gtcagtaccttttt--gttgttttggtt---tactttttttttctttgcctgtctgtttaattaacattatattgtgatgcagCATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAG

upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 15
gttctttgcttcttaagttctgatgactgtataatgttctctttttagaatatttcttgaaccttgtctgtgtatt---gtgcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG
  ||  |     ||   || |  || |||    || |  ||| ||||   | | | || ||||      || | ||    ||||||||||| | ||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |||
-gtcggtaacctttgcattgttttggctg----atctcttctctttaatctctgtgttaaaccaatatcgtattttctgatgcagCATTATTCAGAGTTGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAG

upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G477336_T01 (Zea mays), 3'ss of exon 5
-------------gttctttgcttcttaagttctg-atgactgta--taatgttctctttttagaatatttcttg---aaccttgtctgtgtattgtgcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG
             |  ||     ||   |  | || ||   || |  | || |   |  ||   | |  |  ||    ||||||   | | | |  ||||||||||  | ||||||||||| ||||| |||| |||||| ||||| |||| |||||| ||||||
gttgtacttgcgagccctccaggtcagtacctttgcattggtgcagctgatatctccgcttcgtattcctgtttaactaaccttacattt-tgtaatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG

upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G352837_T01 (Zea mays), 3'ss of exon 4
-------------gttctttgcttct-taagttctgatgactgta--taatgttctctttttagaatatttcttg---aaccttgtctgtgtattgtgcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG
             |  ||     ||  ||  |||  ||   || |  | || |   |  ||   | |  |  ||    ||||||   | | | |  ||||||||||  | ||||||||||| ||||| |||| |||||| ||||| |||| |||||| ||||||
gttgtacttgcgagccctccaggtcagtaccttcgcattggtgcagctgatatctccgcttcgtattcctgtttaactaaccttacattt-tgtaatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG

upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 17
gt-tctttgcttcttaagttctgatgactgtataatgttctct---ttttagaatatttcttgaacc---ttgtctgtgtattgtgcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG
|| |  | | |||| |   ||||||   || |   | ||         || || | ||||||| |     |  |   | | || |||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||||
gtataatggtttctcactatctgattgatgaactttatttcacagacctttgattgtttcttggattaaatgattcatctcttatgcagCATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtataatgttctctttttagaatatttcttgaaccttgtctgtgtattgtgcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG
              tttttagaatatttct  TA-rich tract