1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...gttgacctggcaatggaaaatttagtacagttgtgtcaagatagatgttgatttagcctatctactgatactgactgcagcatttttattttgtgcacagAATGCCATTGACAACATGTACAAGAGTGGAGGAAGTAAACCCAGTGCCTGAGACCTGATATGGGAGTTAATGCCATGGAGATAATTTATTTTCTGTATGT
species | Glycine max |
transcript | GLYMA11G02030.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TCACTCCAACATATAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAG AATGCCATTGACAACATGTACAAGAGTGGAGGAAGTAAACCCAGTGCCTGA
genomic: TCACTCCAACATATAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAGgtacaagttg ... ttgtgcacagAATGCCATTGACAACATGTACAAGAGTGGAGGAAGTAAACCCAGTGCCTGA
tgttgatttagcctatctactgatactgactgcagcatttttattttgtgcacagAATGCCATTGACAACATGTACAAGAGTGGAGGAAGTAAACCCAGTGCCTGAGACCTGATATGGGAGTTAATGCCATGGAGATAATTTATTTTCTGTATGT
tactgac putative branch site (score: 1)
tttttatttt putative PPT
atttttattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgacctggcaatggaaaatttagtacagttgtgtcaagatagatgttgatttagcctatctactgatactgactgcagcatttttattttgtgcacagAATGCCATTGACAACATGTACAAGAGTGGAGGAAGTAAACCCAGTGCCTGAGACCTGATATGGGAGTTAATGCCATGGAGATAATTTATTTTCTGTATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- tgacctg
- - - - - caatgga
- - - - - - - - - - - - - - - - -tgtcaag
- - - - - - - - - - - - - - - - - - - - - -gatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcagca