1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtatatttgtttgtgttctttctacagtatactgttctgacttaattagctaagacttattaattttgtcttgtaagGTTGTTATTACTAATCTTGAAGCCAACTCAGTAATTGAGGTTGATGCAAAGAAATGGCCTGATGCTCAAGCTGATGATGCTTCTGCTTTCTACAAG
species | Glycine max |
transcript | GLYMA10G41920.2 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AATTGAACAAAACAGCTTCTCGTGCAATGGTTGTCCTACATCCACTCAAG GTTGTTATTACTAATCTTGAAGCCAACTCAGTAATTGAGGTTGATGCAAAGEST: gi|193469471|gb|FK436335.1|FK436335
genomic: AATTGAACAAAACAGCTTCTCGTGCAATGGTTGTCCTACATCCACTCAAGgtatatttgt ... gtcttgtaagGTTGTTATTACTAATCTTGAAGCCAACTCAGTAATTGAGGTTGATGCAAAG
EST: AATTGAACAAAACAGCTTCTCGTGCAATGGTTGTCCTACATCCACTCAAG GTTGTTATTACTAATCTTGAAGCCAACTCAGTAATTGAGGTTGATGCAAAGEST: gi|19346023|gb|BM890903.1|BM890903
genomic: AATTGAACAAAACAGCTTCTCGTGCAATGGTTGTCCTACATCCACTCAAGgtatatttgt ... gtcttgtaagGTTGTTATTACTAATCTTGAAGCCAACTCAGTAATTGAGGTTGATGCAAAG
EST: AATTGAACAAAACAGCTTCTCGTGCAATGGTTGTCCTACATCCACTCAAG GTTGTTATTACTAATCTTGAAGCCAACTCAGTAATTGAGGTTGATGCAAAGEST: gi|16995857|gb|BM085229.1|BM085229
genomic: AATTGAACAAAACAGCTTCTCGTGCAATGGTTGTCCTACATCCACTCAAGgtatatttgt ... gtcttgtaagGTTGTTATTACTAATCTTGAAGCCAACTCAGTAATTGAGGTTGATGCAAAG
EST: AATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAG GTTGTCATTACTAATCTTGAAGCCAACTCAGCAATTGAGGTTGATGCAAAGEST: gi|298164021|gb|HO013666.1|HO013666
genomic: AATTGAACAAAACAGCTTCTCGTGCAATGGTTGTCCTACATCCACTCAAGgtatatttgt ... gtcttgtaagGTTGTTATTACTAATCTTGAAGCCAACTCAGTAATTGAGGTTGATGCAAAG
EST: AATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAG GTTGTCATTACTAATCTTGAAGCCAACTCAGCAATTGAGGTTGATGCAAAGEST: gi|17401215|gb|BM177997.1|BM177997
genomic: AATTGAACAAAACAGCTTCTCGTGCAATGGTTGTCCTACATCCACTCAAGgtatatttgt ... gtcttgtaagGTTGTTATTACTAATCTTGAAGCCAACTCAGTAATTGAGGTTGATGCAAAG
EST: AATTGAACAAAACAGCTTCTCGTGCAATGGTTGTCCTACATCCACTCAAG GTTGTTATTACTAATCTTGAAGCCAACTCAGTAATTGAGGTTGATGCAAAGEST: gi|20812918|gb|BQ297396.1|BQ297396
genomic: AATTGAACAAAACAGCTTCTCGTGCAATGGTTGTCCTACATCCACTCAAGgtatatttgt ... gtcttgtaagGTTGTTATTACTAATCTTGAAGCCAACTCAGTAATTGAGGTTGATGCAAAG
EST: CTCGTGCAATGGTTGTCCTACATCCACTCAAG GTTGTCATTACTAATCTTGAAGCCAACTCAGCAATTGAGGTTGATGCAAAG
genomic: CTCGTGCAATGGTTGTCCTACATCCACTCAAGgtatatttgt ... gtcttgtaagGTTGTTATTACTAATCTTGAAGCCAACTCAGTAATTGAGGTTGATGCAAAG
tacagtatactgttctgacttaattagctaagacttattaattttgtcttgtaagGTTGTTATTACTAATCTTGAAGCCAACTCAGTAATTGAGGTTGATGCAAAGAAATGGCCTGATGCTCAAGCTGATGATGCTTCTGCTTTCTACAAG
tattaat putative branch site (score: 2)
ttttgtctt CT-rich tract
taagacttattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatttgtttgtgttctttctacagtatactgttctgacttaattagctaagacttattaattttgtcttgtaagGTTGTTATTACTAATCTTGAAGCCAACTCAGTAATTGAGGTTGATGCAAAGAAATGGCCTGATGCTCAAGCTGATGATGCTTCTGCTTTCTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT