1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...ccacccacacattttgctcttgcaatctgttatttcatgttgaacctgatggaagttatttcttgattgttcataacatggttgatcacccctctggcagGATTTAGAAAGAATTACTAAAGATAACGGTGTAATCAGGGAGCAAGAGCCGTTTACTCTTGGTGAAGTTCAAGCTAGTGAG
species | Glycine max |
transcript | GLYMA10G30720.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TTGAAAAGATTGTGGAGGAATTACTCGAGTTTGAAATTTTGACTGGAAAG GATTTAGAAAGAATTACTAAAGATAACGGTGTAATCAGGGAGCAAGAGCCGEST: gi|7041885|gb|AW471779.1|AW471779
genomic: TTGAAAAGATTGTGGAGGAATTACTCGAGTTTGAAATTTTGACTGGAAAGgtaatgagtg ... cctctggcagGATTTAGAAAGAATTACTAAAGATAACGGTGTAATCAGGGAGCAAGAGCCG
EST: TTGAAAAGATTGTGGAGGAATTACTCGAGTTTGAAATTTTGACTGGAAAG GATNTAGAAAGAATTACTATAGATAAC
genomic: TTGAAAAGATTGTGGAGGAATTACTCGAGTTTGAAATTTTGACTGGAAAGgtaatgagtg ... cctctggcagGATTTAGAAAGAATTACTAAAGATAAC
ctgatggaagttatttcttgattgttcataacatggttgatcacccctctggcagGATTTAGAAAGAATTACTAAAGATAACGGTGTAATCAGGGAGCAAGAGCCGTTTACTCTTGGTGAAGTTCAAGCTAGTGAG
tcacccctct CT-rich tract
aagttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacccacacattttgctcttgcaatctgttatttcatgttgaacctgatggaagttatttcttgattgttcataacatggttgatcacccctctggcagGATTTAGAAAGAATTACTAAAGATAACGGTGTAATCAGGGAGCAAGAGCCGTTTACTCTTGGTGAAGTTCAAGCTAGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - ccacaca
- - - - - - - - ctcttgc
- - - - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - cctgatg