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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacatgctaaacaatttatggcttttatctcctatattgccttctacttgatattcttgatgcttactcaaaaatttccctcagAAATACATAGATTTGGTTGCATCTCTGGAGGGGCTATCTCCACATGTACCACTATATAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACT

Basic information

species Glycine max
transcript GLYMA10G21350.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G21350.2 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G047310_T01 (Zea mays), 3'ss of exon 16
gtaaacatgctaaacaatttatggcttttatctcctatattgccttctacttgatattcttgatgcttactcaaaaa--tttccctcagAAATACATAGATTTGGTTGCATCTCTGGAGGGGCTATCTCCACATGTACCACTATATAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACT
       |   ||   |      |   ||||        |    | ||  ||| | || ||  ||  | |  ||  |  |||||  ||||||||| | ||    |     ||| | || |  || |||||||||||||||||||||||||| |  ||||||||||| || ||||| ||||  || ||||
------gtatcaactgaagccctgaccttattcaagtagtcagttcctgtttgctgttgttc-tgtatgcgtaacgacttttccaccagAAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCACTATATAAAGTCATGGAAGGGAATGAGCCATGCTTCTTCAAGACGTACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193410500|gb|FK379833.1|FK379833
EST:     GTCATTCTGTGGAACCCAA-GAAAAGCGAAATGCTTTTGAAATTGGCCAG                         AAATACATAGATTTGGTTGCATCTCTGGAGGGGCTATCTCCACAATAGTAC
genomic: GTCATTCTGTGGAACCCAAAGAAAAGCGAAATGCTTTTGAAATTGGCCAGgtaaacatgc ... tttccctcagAAATACATAGATTTGGTTGCATCTCTGGAGGGGCTATCTCCACA-T-GTAC
EST: gi|9565739|gb|BE475248.1|BE475248
EST:     GTCATTCTGTGGAACCCAAAGAAAAGCGAAATGCTTTTGAAATTGGCCAG                         AAATACATAGATTTGGTTGCATCTCTGGAGGGGCTATCTCCACATGTACCA
genomic: GTCATTCTGTGGAACCCAAAGAAAAGCGAAATGCTTTTGAAATTGGCCAGgtaaacatgc ... tttccctcagAAATACATAGATTTGGTTGCATCTCTGGAGGGGCTATCTCCACATGTACCA
EST: gi|24206274|gb|BU965527.1|BU965527
EST:     GTCATTCTGTGGAACCCAAAGAAAAGCGAAATGCTTTTGAAATTGGCCAG                         AAATACATAGATTTGGTTGCATCTCTGGAGGGGCTATCTCCACATGTACCA
genomic: GTCATTCTGTGGAACCCAAAGAAAAGCGAAATGCTTTTGAAATTGGCCAGgtaaacatgc ... tttccctcagAAATACATAGATTTGGTTGCATCTCTGGAGGGGCTATCTCCACATGTACCA
EST: gi|33390214|gb|CA853421.1|CA853421
EST:     GTCATTCTGTGGAACCCAAAGAAAAGCGAAATGCTTTTGAAATTGGCCAG                         AAATACATAGATTTGGTTGCATCTCTGGAGGGGCTATCTCCACATGTACCA
genomic: GTCATTCTGTGGAACCCAAAGAAAAGCGAAATGCTTTTGAAATTGGCCAGgtaaacatgc ... tttccctcagAAATACATAGATTTGGTTGCATCTCTGGAGGGGCTATCTCCACATGTACCA
EST: gi|13481166|gb|BG510509.1|BG510509
EST:     GTCATTCTGTGGAACCCAAAGAAAAGCGAAATGCTTTTGAAATTGGCCAG                         AAATACATAGATTTGGTTGCATCTCTGGAGGGGC
genomic: GTCATTCTGTGGAACCCAAAGAAAAGCGAAATGCTTTTGAAATTGGCCAGgtaaacatgc ... tttccctcagAAATACATAGATTTGGTTGCATCTCTGGAGGGGC
EST: gi|26048794|gb|CA785247.1|CA785247
EST:     GTCATTCTGTGGAACCCAAAGAAAAGCGAAATGCTTTTGAAATTGGCCAG                         AAATACCTAGATTTGGTTGCATCTCTGGAGGGGCTATCTCCACATGTACCA
genomic: GTCATTCTGTGGAACCCAAAGAAAAGCGAAATGCTTTTGAAATTGGCCAGgtaaacatgc ... tttccctcagAAATACATAGATTTGGTTGCATCTCTGGAGGGGCTATCTCCACATGTACCA
EST: gi|193475713|gb|FK439428.1|FK439428
EST:     GTCATTCTGTGGAACCCAAAGAAAAGCGAAATGCTTTTGAAATTGGCCAG                         AAATACATAGATTTGGTTGCATCTCTGGAGGGGCTATCTCCACATGTACCA
genomic: GTCATTCTGTGGAACCCAAAGAAAAGCGAAATGCTTTTGAAATTGGCCAGgtaaacatgc ... tttccctcagAAATACATAGATTTGGTTGCATCTCTGGAGGGGCTATCTCCACATGTACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctatattgccttctacttgatattcttgatgcttactcaaaaatttccctcagAAATACATAGATTTGGTTGCATCTCTGGAGGGGCTATCTCCACATGTACCACTATATAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACT
                               tgcttac  putative branch site (score: 2)
                                             tttccctc  putative PPT
                                  ttactcaaaaattt  TA-rich tract