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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtattattgaaccaagtttatctgatttgatattaacattttattgagttaaattttatgcttacgttgctttttgttctccactccgactctcaatgtggactgtctccagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGATGACGATGACGACAATGATGAAGTCAGTGATAGTGGCAGTGAATTATCA

Basic information

species Glycine max
transcript GLYMA09G32870.2
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193415612|gb|FK376246.1|FK376246
EST:     ATCCATGTTTGTTGAAGAGAAGTGAAAG                         CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
genomic: ATCCATGTTTGTTGAAGAGAAGTGAAAGgttagtatta ... ctgtctccagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
EST: gi|17963348|gb|BM270098.1|BM270098
EST:     CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAGAAGTGAAAG                         CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
genomic: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAGAAGTGAAAGgttagtatta ... ctgtctccagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
EST: gi|120493682|gb|EH221849.1|EH221849
EST:     CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAGAAGTGAAAG                         CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
genomic: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAGAAGTGAAAGgttagtatta ... ctgtctccagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
EST: gi|193425625|gb|FK386902.1|FK386902
EST:     CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAGAAGTGAAAG                         CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
genomic: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAGAAGTGAAAGgttagtatta ... ctgtctccagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcttacgttgctttttgttctccactccgactctcaatgtggactgtctccagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGATGACGATGACGACAATGATGAAGTCAGTGATAGTGGCAGTGAATTATCA
 tgcttac  putative branch site (score: 2)
                                             ctgtctcc  putative PPT
             tttttgtt  TA-rich tract