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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaatgcagtcaacttgttggacgatatattgatttcctatacatacttttatatattgaatctccgtttccatgacaacttagGTTGGTATCTCACTTGCTCAAATTGGAGAATTTGCTTTTGTCCTCCTGAGTCGTGCTTCAAATCTTCACCTTGTTGAG

Basic information

species Glycine max
transcript GLYMA09G27940.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G27940.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 16
gtaagttaatgcagtcaacttgttggacgatatattgatttcctatacatacttttatatattgaatctc-------cgtttccat---gacaacttagGTTGGTATCTCACTTGCTCAAATTGGAGAATTTGCTTTTGTCCTCCTGAGTCGTGCTTCAAATCTTCACCTTGTTGAG
|||||||       | |  || ||   |   |  |||||||     | |||  || | | ||  |||||          || ||||   || |  |||||||||  | |  ||||||||||| ||||||||||||||||| ||| | || || ||||| |||||| | ||| |||||
gtaagttgtcttcctaagattttttagcataactttgatttatatcagataaattca-acatataatctggtgataattttcccatttggaaatgttagGTTGGAGTATTGCTTGCTCAAATAGGAGAATTTGCTTTTGTTCTCTTAAGCCGGGCTTCGAATCTTAAACTTATTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13477929|gb|BG507606.1|BG507606
EST:     CTGTTTTAGTTACAAAGGCCTTTGGTTATAGCCTTAAGACATCATTTATT                         GTTGGTATCTCACTTGCTCAAATTGGAGAATTTGCTTTTGTCCTCCTGAGT
genomic: CTGTTTTAGTTACAAAGGCCTTTGGTTATAGCCTTAAGACATCATTTATTgtaagttaat ... gacaacttagGTTGGTATCTCACTTGCTCAAATTGGAGAATTTGCTTTTGTCCTCCTGAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatttcctatacatacttttatatattgaatctccgtttccatgacaacttagGTTGGTATCTCACTTGCTCAAATTGGAGAATTTGCTTTTGTCCTCCTGAGTCGTGCTTCAAATCTTCACCTTGTTGAG
 tattgat  putative branch site (score: 3)
         tatacatacttttata  TA-rich tract