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gtgagtgtcatatgacatattttatagtgtcttttattatgtgctgttcgctcctctttctacaccatgtttaggttctctgttggatgcttagaatataaaggcctgtatttgaaatgttattacagAAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGGACAAGAGGAATGTGATAAACGGAGAGCTGCTTCGGCTTCTGGTTGAAAA
species | Glycine max |
transcript | GLYMA09G00580.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAAC AAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGGEST: gi|208295200|gb|GE095201.1|GE095201
genomic: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACgtgagtgtca ... gttattacagAAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
EST: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAAC AAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGGEST: gi|207815787|gb|GD786992.1|GD786992
genomic: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACgtgagtgtca ... gttattacagAAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
EST: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAAC AAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGGEST: gi|193723143|gb|FK660085.1|FK660085
genomic: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACgtgagtgtca ... gttattacagAAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
EST: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAAC AAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGGEST: gi|193731483|gb|FK663629.1|FK663629
genomic: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACgtgagtgtca ... gttattacagAAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
EST: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAAC AAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGGEST: gi|208295251|gb|GE095224.1|GE095224
genomic: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACgtgagtgtca ... gttattacagAAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
EST: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAAC AAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
genomic: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACgtgagtgtca ... gttattacagAAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
ggttctctgttggatgcttagaatataaaggcctgtatttgaaatgttattacagAAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGGACAAGAGGAATGTGATAAACGGAGAGCTGCTTCGGCTTCTGGTTGAAAA
tatttgaaatgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgtcatatgacatattttatagtgtcttttattatgtgctgttcgctcctctttctacaccatgtttaggttctctgttggatgcttagaatataaaggcctgtatttgaaatgttattacagAAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGGACAAGAGGAATGTGATAAACGGAGAGCTGCTTCGGCTTCTGGTTGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT