1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...tctagatattctaactgttaacattcattatatcttaccatattctctatgctacttgattggttgaacatacctgaatttccatgcttttcataactagGTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATACAG
species | Glycine max |
transcript | GLYMA08G07160.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTG GTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATACEST: gi|9440008|gb|BE440519.1|BE440519
genomic: TCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGgtactttata ... tcataactagGTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATAC
EST: TCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTG GTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATACEST: gi|16349201|gb|BI974796.1|BI974796
genomic: TCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGgtactttata ... tcataactagGTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATAC
EST: TCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTG GTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATACEST: gi|16347149|gb|BI972744.1|BI972744
genomic: TCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGgtactttata ... tcataactagGTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATAC
EST: TCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTG GTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATACEST: gi|21887251|gb|BQ740464.1|BQ740464
genomic: TCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGgtactttata ... tcataactagGTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATAC
EST: TCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTG GTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATACEST: gi|7588935|gb|AW704720.1|AW704720
genomic: TCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGgtactttata ... tcataactagGTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATAC
EST: AAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTG GTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATAC
genomic: AAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGgtactttata ... tcataactagGTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATAC
tctatgctacttgattggttgaacatacctgaatttccatgcttttcataactagGTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATACAG
acttgat putative branch site (score: 5)
tttccatgcttttc putative PPT
ttttcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctagatattctaactgttaacattcattatatcttaccatattctctatgctacttgattggttgaacatacctgaatttccatgcttttcataactagGTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - ctaactg
- - - - - - - - - - acattca
- - - - - - - - - - - - - - - - -cttacca
- - - - - - - - - - - - - - - - - - - - - - - - -tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgct