1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaagatgcttataatatttatttaaatataaaagttctatcaaacttgcaacttgactgacttaaatatctcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCGCTCCAACAGTCATTACATGAACACATTCAAGTGGAAGGTGGTTAGATC
species | Glycine max |
transcript | GLYMA08G04890.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|22932077|gb|BU549216.1|BU549216
genomic: CTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|58019793|gb|CX706535.1|CX706535
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|13312083|gb|BG405734.1|BG405734
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|19269460|gb|BM885716.1|BM885716
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|6567204|gb|AW234815.1|AW234815
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|12690328|gb|BG156664.1|BG156664
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGTGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCEST: gi|12691027|gb|BG157363.1|BG157363
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAEST: gi|193597826|gb|FK549232.1|FK549232
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGA
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|6725125|gb|AW309524.1|AW309524
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|193391580|gb|FK354155.1|FK354155
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|6071404|gb|AW100791.1|AW100791
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|14195900|gb|BE819895.2|BE819895
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|58015854|gb|CX702596.1|CX702596
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|151406289|gb|EV276104.1|EV276104
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|19453014|gb|BM954424.1|BM954424
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|57574755|gb|CX547730.1|CX547730
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|23064423|gb|BU579196.1|BU579196
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|13789290|gb|BG651881.1|BG651881
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCEST: gi|120530798|gb|EH258931.1|EH258931
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
EST: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTT GTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
genomic: AGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTgtaagatgct ... tcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCC
atataaaagttctatcaaacttgcaacttgactgacttaaatatctcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCGCTCCAACAGTCATTACATGAACACATTCAAGTGGAAGGTGGTTAGATC
gactgac putative branch site (score: 2)
ttaaatatctcaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatgcttataatatttatttaaatataaaagttctatcaaacttgcaacttgactgacttaaatatctcaattacagGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCGCTCCAACAGTCATTACATGAACACATTCAAGTGGAAGGTGGTTAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG