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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactctcatgtgatgtcaaataaagcgagcacatatatgtttttctcatcaatttataatctacactctacagGAGATCACTGGAGTATTCATGAGGAATTGTACGCTGAACTATTCTTCATATCGAAACATTTTTCTCATATGGGCTCTGGGAGAGTATCGTCGCCGTGTCT

Basic information

species Glycine max
transcript GLYMA08G03060.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03060.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv11s0065g00030.t01 (Vitis vinifera), 3'ss of exon 18
---------------------------------------------------------------------------gtaactctcatg--tga----tgtcaaataaagcgagca-catatatgtttttctcatcaatttataatctacactcta---------cagGAGATCACTGGAGTATTCATGAGGAATTGTACGCTGAACTATTCTTCATATCGAAACATTTTTCTCATATGGGCTCTGGGAGAGTATCGTCGCCGTGTCT
                                                                            || || |  |   |||    |  || |     |  ||| ||| | ||||||  ||||||   | |||      || ||         ||||| ||||| || |||||||||| ||| ||||| || ||||||||||| ||||||||||| || |  ||||||||||| ||||| ||  || | |||||  
gtaatcatatgaatgtattaaaaccttgattcaatgtttcttgttctctgttgctaaggtagtacaatacaccggatatcttttgttgctgaaaacttccacactttccatgcatcatgt-tgttttcttcatcatcatctaactattgctttatggtgacaacagGAAATCACAGGTGTATTCATGAAGAACTGTACTCTAAACTATTCTTCGTATCGAAACATCTTCCCAATATGGGCTCTTGGAGAATACAGTAGGCGTGTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304695|gb|FG998753.1|FG998753
EST:     TAAGGTTATTAATAAATTCTCAAATGGAAGATGGAGACTTTCCACAACAG                         GAGATCACTGGAGTATTCATGAGGAATTGTACGCTGAACTATTCTTCATAT
genomic: TAAGGTTATTAATAAATTCTCAAATGGAAGATGGAGACTTTCCACAACAGgtaactctca ... cactctacagGAGATCACTGGAGTATTCATGAGGAATTGTACGCTGAACTATTCTTCATAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataaagcgagcacatatatgtttttctcatcaatttataatctacactctacagGAGATCACTGGAGTATTCATGAGGAATTGTACGCTGAACTATTCTTCATATCGAAACATTTTTCTCATATGGGCTCTGGGAGAGTATCGTCGCCGTGTCT
              atatatgtttttctca  TA-rich tract