Sequence
atgc intronic sequence ATGC exonic sequencegttagttggatgattgtaaaagatttcttttttatgtttttatcttgtatacatatataacctttttcctctccagGAGGTTAAGGAGTGTGCTATCTCCTGCATGGGCCTCATTGTGTCAACATTTGGCGATCATCTTAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTG
Basic information
species | Glycine max |
transcript | GLYMA07G40230.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G40230.2 (Glycine max), 3'ss of exon 17
lower sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 16
---------------------------------------------------------------------------------------------------------gttagttggatgattgtaaaag---atttct-------tttttatgtttttatcttgtatacatat----ataacctttttcctctccagGAGGTTAAGGAGTGTGCTATCTCCTGCATGGGCCTCATTGTGTCAACATTTGGCGATCATCTTAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTG
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gtctgtagcataaatccccctttttagtcttgtttatgaaaatccatacttcttcgggcaatagacttaataatcttatttgaactctttctattcgtcattatgtttaattacagaattggaaaagcagatttctgcgtttgtatttgtaattttgtgttatttacatttcgtaatatctcttcccttcaacagGAGGTCAAGGAGTGTGCTATCACCTGCATGGGTCTTGTGATTTCAACATTTGGTGATCAACTGAGGGCAGAGTTACCTTCATGCCTTCCTGTGCTTGTTG
upper sequence: GLYMA07G40230.2 (Glycine max), 3'ss of exon 17
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 3'ss of exon 17
gttagttggatgattgtaaaagatttcttttttatgtttttatcttgtatacatatataacctttttcctctccagGAGGTTAAGGAGTGTGCTATCTCCTGCATGGGCCTCATTGTGTCAACATTTGGCGATCATCTTAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTG
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gttagcagaatttatttgaagg---tttttcttaggcatttttactatat-cttatggaactctttt----tccagGAGGTCAAGGAGTGTGCTATTTCTTGCATGGGCCTTCTCGTTTCAACATTTGGTGATAACCTCAGAGCAGAATTACCTGCATGCCTTCCTGTACTTGTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193536631|gb|FK490571.1|FK490571EST: CCATATATAACGGCATTATGTCACGCTTAATAAACCAAGATCAGGATCAG GAGGTTAAGGAGTGTGCTATCTCCTGCATGGGCCTCATTGTGTCAACATTT
genomic: CCATATATAACGGCATTATGTCACGCTTAATAAACCAAGATCAGGATCAGgttagttgga ... tcctctccagGAGGTTAAGGAGTGTGCTATCTCCTGCATGGGCCTCATTGTGTCAACATTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatttcttttttatgtttttatcttgtatacatatataacctttttcctctccagGAGGTTAAGGAGTGTGCTATCTCCTGCATGGGCCTCATTGTGTCAACATTTGGCGATCATCTTAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTG
atataac putative branch site (score: 3)
taacctttttcctctc CT-rich tract
ttttttatgtttttat TA-rich tract