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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaaccaacctacaaaccgtttgttgtgtatttcttttctttgtatctcctatcctctttgatacttaatgaaatgttctttttccggcagCTTTTGTTGATGAAAAGAGGAGGGCAAGTGATCTACTCAGGACCATTAGGCCGAAACTCCCACAAGATTGTAGAATACTTTGAG

Basic information

species Glycine max
transcript GLYMA07G01860.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01860.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv09s0002g03560.t01 (Vitis vinifera), 3'ss of exon 6
gtaccaaccaacctacaaaccgtttgttgtgtatttcttttctttgtatctcctatcctctttgatacttaatgaaatgttctttttccggcagCTTTTGTTGATGAAAAGAGGAGGGCAAGTGATCTACTCAGGACCATTAGGCCGAAACTCCCACAAGATTGTAGAATACTTTGAG
         |     ||     || ||     | || | |   |  | | |  |||  |  | |   || |     ||| | || |||   |||||  |  ||||||| ||||||||||||||||| || ||||||||  | || ||||| |||||||||||  | ||||||||||||
-------gtagatatcatgaaattggtcaca-acttttctcaatcatgttttatattgtgct-gtctctcacaccgatggtattgttc-atcagCTGCTACTGATGAAGAGAGGAGGGCAAGTGATATATTCAGGACCTCTGGGTCGAAATTCCCACAAGATCATTGAATACTTTGAG

upper sequence: GLYMA07G01860.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv09s0002g03640.t01 (Vitis vinifera), 3'ss of exon 15
gtaccaaccaacctacaaaccgtttgttgtgtatttcttttctttgtatctcctatcctctttgatacttaatgaaatgttctttttccggcagCTTTTGTTGATGAAAAGAGGAGGGCAAGTGATCTACTCAGGACCATTAGGCCGAAACTCCCACAAGATTGTAGAATACTTTGAG
         |     ||     || ||     | || | |   |  | | |  |||  | || |   || |     ||| | || |||   |||||  |  ||||||| ||||||||||||||||| || ||||||||  | |||||||| |||||||||||  | ||||||||||||
-------gtagatatcatgaaattggtcaca-acttttctcaatcatgttttatattgtgtt-gtctctcacaccgatggtattgttc-atcagCTGCTACTGATGAAGAGAGGAGGGCAAGTGATATATTCAGGACCTCTGGGCCGAAATTCCCACAAGATCATTGAATACTTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttgtatctcctatcctctttgatacttaatgaaatgttctttttccggcagCTTTTGTTGATGAAAAGAGGAGGGCAAGTGATCTACTCAGGACCATTAGGCCGAAACTCCCACAAGATTGTAGAATACTTTGAG
                           acttaat  putative branch site (score: 4)
                                      tgttctttttcc  putative PPT
                         atacttaatgaaat  TA-rich tract