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...gcatccgttacttacatcaacttcaaatttgttgtatgtatgtgtgtgtatatatatatagatgagtctataaaaaatttgctgtcatctttgtctgtagGTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGTGTAATTGCTAGGAAGAGCCGATTTGGTGTTTTACTTCAGAGAATCAAG
species | Glycine max |
transcript | GLYMA07G01480.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CAATCCCAAACCAAAACTAGAAGAAGACATCACTAGACTATCTGGAGGAG GTGATTGGCACEST: gi|58014784|gb|CX701526.1|CX701526
genomic: CAATCCCAAACCAAAACTAGAAGAAGACATCACTAGACTATCTGGAGGAGgtgaggatat ... ttgtctgtagGTGATTGGCAC
EST: CAATCCCAAACCAAAACTAGAAGAAGACATCACTAGACTATCTGGAGGAG GTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGEST: gi|22930572|gb|BU547711.1|BU547711
genomic: CAATCCCAAACCAAAACTAGAAGAAGACATCACTAGACTATCTGGAGGAGgtgaggatat ... ttgtctgtagGTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTG
EST: CAATCCCAAACCAAAACTAGAAGAAGACATCACTAGACTATCTGGAGGAG GTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGEST: gi|24136265|gb|BU926775.1|BU926775
genomic: CAATCCCAAACCAAAACTAGAAGAAGACATCACTAGACTATCTGGAGGAGgtgaggatat ... ttgtctgtagGTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTG
EST: CAATCCCAAACCAAAACTAGAAGAAGACATCACTAGACTATCTGGAGGAG GTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGEST: gi|58024159|gb|CX710900.1|CX710900
genomic: CAATCCCAAACCAAAACTAGAAGAAGACATCACTAGACTATCTGGAGGAGgtgaggatat ... ttgtctgtagGTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTG
EST: CAATCCCAAACCAAAACTAGAAGAAGACATCACTAGACTATCTGGAGGAG GTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGEST: gi|58023995|gb|CX710736.1|CX710736
genomic: CAATCCCAAACCAAAACTAGAAGAAGACATCACTAGACTATCTGGAGGAGgtgaggatat ... ttgtctgtagGTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTG
EST: CAATCCCAAACCAAAACTAGAAGAAGACATCACTAGACTATCTGGAGGAG GTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTG
genomic: CAATCCCAAACCAAAACTAGAAGAAGACATCACTAGACTATCTGGAGGAGgtgaggatat ... ttgtctgtagGTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTG
gtgtatatatatatagatgagtctataaaaaatttgctgtcatctttgtctgtagGTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGTGTAATTGCTAGGAAGAGCCGATTTGGTGTTTTACTTCAGAGAATCAAG
tctttgtct CT-rich tract
tatatatatagatgag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatccgttacttacatcaacttcaaatttgttgtatgtatgtgtgtgtatatatatatagatgagtctataaaaaatttgctgtcatctttgtctgtagGTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGTGTAATTGCTAGGAAGAGCCGATTTGGTGTTTTACTTCAGAGAATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
gcatccg
- - - - - - - catcaac
- - - - - - - - - - - - - - - - tgtatgt
- - - - - - - - - - - - - - - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtc