Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttctttttttattttcccctctcccttgtgactgtaggattaggattttgataaattgtgccacaatgtttgactgtacaaatggaaatcactgttctgtagGGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGATGCATCAGTCTCCAGTATGGATGCTTCCCCATCAAACGCTGAATCCACTACCA

Basic information

species Glycine max
transcript GLYMA06G39770.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G39770.1 (Glycine max), 3'ss of exon 17
lower sequence: AT3G20630.1 (Arabidopsis thaliana), 3'ss of exon 18
gtaatttctttttttattttcccctctcccttgtgactgtaggattaggattttgataaattgtgccacaatgtttgactgtacaaatggaaatcactgttctgtagGGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGATGCATCAGTCTCCAGTATGGATGCTTCCCCATCAAACGCTGAATCCACTACCA
|||      ||||           |  |  ||    |||   |  |    |||   ||     | |   |||    |  | |     |     |     ||    |||| || |||||||||||||||||||| ||| |||| ||||| ||| ||||||| || ||    |||||||  ||| |    ||  | |     ||| |  
gtataacacttttgagcaaattagttacattt----ctgcgaggctgttttttctttactcattactgaaat---cggttttgtttttt----ttgtctttaatcagGGAGGAGACATTGAGAAAGCAACAGACTGGGTATTCAACAACCCTAATGCATCTGTTTCAGACATGGATGTATCCTCTAGCAATTCAGCGCAGACTCCGG

upper sequence: GLYMA06G39770.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv19s0014g03920.t01 (Vitis vinifera), 3'ss of exon 18
--gtaatttctttttttattttcccctctcccttgtgactgtaggattaggattttgataaattgtgccacaatgtttgactgtacaaatggaaatcactgttctgtagGGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGATGC-ATCAGTC--TCCAGTATGGATGCTTCCCCATCAAACGCTGAATCCACTACCA
    ||||||  |   |   || |  |      | |||  ||    |    |||||  |    |  |  |     |||| ||| ||   |||  ||         | |||||||||| |||||||||||||| ||||||||||||| ||||||||||||    |||   ||   |||||||||| |   | ||| |  |    | ||| |  
gtaaaatttcagtaccttagtttcttttggggatatgaacgtcatgtgtcaattttcttgtggtaggttatgggatttgcctg-acttttggggattg-------gcagGGTGGTGATATTGAGAAAGCAACTGATTGGATATTTAGCAATCCTGATGCTGCTAGTTCATCAGATATGGATGCTAC---AACAAGCAGTACTCCTACTGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192317823|gb|FK010185.1|FK010185
EST:     TTTCTTTTGGATTTGAAGAAGAAATTGCTAGGAATGCTCTGAAGGCATCG                         GGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGATGCA
genomic: TTTCTTTTGGATTTGAAGAAGAAATTGCTAGGAATGCTCTGAAGGCATCGgtaatttctt ... tgttctgtagGGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGATGCA
EST: gi|207714008|gb|GD696901.1|GD696901
EST:     TTTCTTTTGGATTTGAAGAAGAAATTGCTAGGAATGCTCTGAAGGCATCG                         GGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGATGCA
genomic: TTTCTTTTGGATTTGAAGAAGAAATTGCTAGGAATGCTCTGAAGGCATCGgtaatttctt ... tgttctgtagGGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGATGCA
EST: gi|193697156|gb|FK634840.1|FK634840
EST:     TTTCTTTTGGATTTGAAGAAGAAATTGCTAGGAATGCTCTGAAGGCATCG                         GGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAA
genomic: TTTCTTTTGGATTTGAAGAAGAAATTGCTAGGAATGCTCTGAAGGCATCGgtaatttctt ... tgttctgtagGGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAA
EST: gi|193541662|gb|FK497062.1|FK497062
EST:     TTTCTTTTGGATTTGAAGAAGAAATTGCTAGGAATGCTCTGAAGGCATCG                         GGTGGTGACATTGAGAAAGACAAACAAGATTGGATATTTAA
genomic: TTTCTTTTGGATTTGAAGAAGAAATTGCTAGGAATGCTCTGAAGGCATCGgtaatttctt ... tgttctgtagGGTGGTGACATTGAGAAAG-CAA-CA-GATTGGATATTTAA
EST: gi|192317822|gb|FK010184.1|FK010184
EST:     TTTCTTTTGGATTTGAAGAAGAAATTGCTAGGAATGCTCTGAAGGCATCG                         GGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGATGCA
genomic: TTTCTTTTGGATTTGAAGAAGAAATTGCTAGGAATGCTCTGAAGGCATCGgtaatttctt ... tgttctgtagGGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGATGCA
EST: gi|208190086|gb|GD990048.1|GD990048
EST:     TCTTTTGGATTTGAAAGAAGAAAATTGCTAGGAATGCTCTGAAGGCATCG                         GGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGATGCA
genomic: TCTTTTGGATTTG-AAGAAG-AAATTGCTAGGAATGCTCTGAAGGCATCGgtaatttctt ... tgttctgtagGGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGATGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgataaattgtgccacaatgtttgactgtacaaatggaaatcactgttctgtagGGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGATGCATCAGTCTCCAGTATGGATGCTTCCCCATCAAACGCTGAATCCACTACCA
                    gtttgac  putative branch site (score: 4)
                                            ctgttct  putative PPT
     aaattgt  TA-rich tract