Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctggaaaaaaaaacaatttagcaaagttataatttttattactgtggcattcctcaatattcttattctttttgtgtatagGCTTGTGCATCTTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTTATTGTTCAAAAACGGCATCACACTAGACTCTTCGCAAACAATCATGATGACA

Basic information

species Glycine max
transcript GLYMA06G23920.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G23920.1 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 3'ss of exon 17
-gtacctggaaaaaaaaacaatttagcaaagttataatttttattactgtggcattcctcaatattcttattctttttgtgtatagGCTTGTGCATCTTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTTATTGTTCAAAAACGGCATCACACTAGACTCTTCGCAAACAATCATGATGACA
  ||  || |     |     |||| |  || |||  | |  | |    | |  | ||| |  |    | |||||||       |||| ||||||||| | ||||| | ||| || ||||| |||||||| ||  |||| ||||| || || || || ||||||||||||||||||||  | ||||
gttagatgcatttgtattttcttta-ctcagatattttgtccactttattaggttgcctgacgaaatgttttctttt-------agGCATGTGCATCTCTAGAACCAAATTATCAGCCTCCTGTAACATTCGTGGTTGTCCAAAAGCGTCACCATACAAGACTCTTCGCAAACAATCACAAAGACA

upper sequence: GLYMA06G23920.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G079080_T02 (Zea mays), 3'ss of exon 17
gtacctggaaaaaaaaacaatttagcaaagttataatttttattactgtggcattcct-caatattcttattc-tttttgtgtatagGCTTGTGCATCTTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTTATTGTTCAAAAACGGCATCACACTAGACTCTTCGCAAACAATCATGATGACA
                 || ||||     |||    ||||||||  | |    | | |  | | | || | |    ||| | |  |||| ||||||||  | ||||| | |||||| ||||| |||||||||||  | ||||||||||| ||||| || ||||| || ||||| |||||  | ||||
---------gttgggtgcattttaat---gtt----tttttattcttctaagctccttatagtttactaactagcgtttttttccagGCATGTGCATCCCTAGAACCAAATTACCAGCCTCCTGTAACATTTGTGGTGGTTCAAAAACGTCATCATACAAGACTATTTGCAAATAATCACAAAGACA

upper sequence: GLYMA06G23920.1 (Glycine max), 3'ss of exon 17
lower sequence: AC189879.3_FGT003 (Zea mays), 3'ss of exon 16
gtacctggaaaaaaaaacaatttagcaaagttataatttttattactgtggcattcctcaatattcttattctt-tttgtgtatagGCTTGTGCATCTTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTTATTGTTCAAAAACGGCATCACACTAGACTCTTCGCAAACAATCATGATGACA
      ||   |   ||   |||  |    || ||||| || | |  |   | |     | | | || | |  |  ||   |  |||| || |||||  | ||||| | |||||| ||||| |||||||||||  | ||||||||||| ||||| || ||||| ||  ||||||||||  | ||||
--gttgggtgcatttaattttttttc----ttctaattcttctaa--gccccttcatagagtttactaactagtgcttactttcagGCATGCGCATCCCTAGAACCAAATTACCAGCCTCCTGTAACATTTGTGGTGGTTCAAAAACGTCATCATACGAGACTATTTACAAACAATCACAAAGACA

upper sequence: GLYMA06G23920.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 17
gtacctggaaaaaaaaacaatttagcaaagttataatttttattactgtggcattcctcaatattcttattc--tttttgtgtatagGCTTGTGCATCTTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTTATTGTTCAAAAACGGCATCACACTAGACTCTTCGCAAACAATCATGATGACA
                     ||| |||  | |||   |   |||    | |||   ||| | |||||||    | | ||||| ||||| || ||||| |||||||||||||||||||||||||| ||||||||| | || ||||||||||| |||||||||||||| |||| ||| ||  ||||||
----------------gttggttaccaac-tgataccatgccttatcaagacatctttca-tgttcttatatagtgtctgtgtctagGCCTGCGCATCATTGGAACCTAGTTACCAACCTCCAGTGACATTTGTTGTCGTCCAAAAACGGCACCACACTAGACTCTTTGCAAGCAACCACAATGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttataatttttattactgtggcattcctcaatattcttattctttttgtgtatagGCTTGTGCATCTTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTTATTGTTCAAAAACGGCATCACACTAGACTCTTCGCAAACAATCATGATGACA
                               tattcttattcttttt  CT-rich tract
                             aatattcttattcttt  TA-rich tract